RNA id: TU241991


Basic Information

Item Value
RNA id TU241991
length 700
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G178617
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23411105 ~ 23418343 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagtgtgaagttttcaccAATCAGTGAACTTAATTGAGTGTAGacacacataaaaaagaaaaaaaaatatttaaaattagtttatttaagaaatCAATTAATTGTTATTGATTAtttacaaacatatatatatatatatatatatttaattctgaaatgtgattttacatttttacacagttttggGGCATTTATTGAACATCAAATAAAcagtcctttctttttcttggtTTTCTTTGCAGAAGAAGCAGGAATGGAGCCCCCCGGTGTTTCTGCCCAATCAGGAAGCTTCCTCTTAGGTATCTGGCTTACAGTCTTCACTGGGGAATCACTGAACAGATCCTGAGTGTCTTTATCCAGATCCTCCTGATTCCAGGAGGCCAATTTCATGCCACCAGTGTAGGAGATCTCTGTAGgcttcatctcctccacactACACTGGTCATGACCCTGGCTATCACTGCTGACTGGGCCCATATCCTCAGGCATGGGCAGTTCACTGAAGAGGTCATCCTCACTCATGTCTATACTGTCTTGCTCTGCCTCTTCCTCAGGCTGCTGTTGCTGATTCCCTGAACTGAGGGCAGGGCTGTCACTGTCTAACTCAACAGATTTAACCTAAAAGAAATGAGCACATCAGCATAAAtcactacatattttaatatgacAGACACTTTTAGCCATTTTTACCAAAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241990 lncRNA upstream 7371 23402970 ~ 23403734 (+) True G178616
TU241988 lncRNA upstream 13870 23397023 ~ 23397235 (+) True G178614
XR_002651468.1 lncRNA upstream 63089 23274449 ~ 23348016 (+) False LOC111195072
TU241999 lncRNA downstream 6812 23425155 ~ 23426497 (+) True G178623
TU242000 lncRNA downstream 9042 23427385 ~ 23432711 (+) True G178624
TU241985 lncRNA downstream 28746 23447089 ~ 23475205 (+) True G178611
TU242008 lncRNA downstream 81500 23499843 ~ 23500341 (+) True G178632
TU242013 lncRNA downstream 97232 23515575 ~ 23515901 (+) True G178635
XM_007255267.3 mRNA upstream 193847 23203476 ~ 23217258 (+) True fut10
XM_022681271.1 mRNA upstream 223881 22995089 ~ 23187224 (+) False LOC103038592
XM_022681283.1 mRNA downstream 41025 23459368 ~ 23461975 (+) True purg
XM_022680722.1 mRNA downstream 61194 23479537 ~ 23494300 (+) True LOC111188215
XM_022681284.1 mRNA downstream 75811 23494154 ~ 23497618 (+) True LOC103034079
XM_022681285.1 mRNA downstream 84964 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA downstream 84964 23503307 ~ 23514711 (+) False ppp2cb
TU241823 other upstream 446116 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 701548 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 864975 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 908946 22493440 ~ 22502159 (+) False LOC103022948
XR_002651470.1 other downstream 285644 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1029537 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1083531 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3495543 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4105975 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile