RNA id: TU242228


Basic Information

Item Value
RNA id TU242228
length 1263
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id LOC111195075
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24298112 ~ 24301847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caTGTTACTAAAAATTAACACTGGACCGTGTTTTTAAATACTTGCCATTCTGGATGTCCTGAACTTTTTCATGCGGgcctgtgtgttttaaaaaatatgtattttattcattCTATTTTATGTCggttagtttaatttaatgacTTGTCAGTTAATcctgtttttccagtgctgttGCTAATTGTACTGAGTGTCTGCAGTGTACTGGGAGGATTGTGCTGGGTGCTAATTGTTTCTCAGGTGGTAAATCATGTTTGTTGTTGaagGGAAGCTGGGGCAGAAGAATGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGGGCAGTGTTTGCAGGCTACTGACCTGAGGACCTACTGCATGGACAACTGAAGAACCTCCCCCTGGAAGTGGCACTCATGCACATGGCTGGTGTTGACTCATTCATTGCTGGAGGGACCTCAAGCTTCTCCATAGAGCTGCTGGACTGGTCTAAGCTTCAGGACGAGGTCGTGTCGGTGATGGAGCCTATGCTCCAATGCTCTGCTTGGACCTCTTCGATTACATCCAGGCCAGCGGATGCCTGCAGGAGGAATAAGCCAAGGTACTTCTAAAGTAGCTAATCGAAGACATGATTGAGGTCCAAGCCAGAGGGGCTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCAAGAGTGGTTTATCCATGAGGCCAAATCCTCCAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATAACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTACGACCCCTGGCTAAGTATACACCACAACACAGCCACCACATCAGGCACACCTCAGTCAGGTACCCTGTaaaaccataataataataataataataaaaaatctatattttcaaTCTCTAGTTTAGAGTGTTCTctagtagagctgggcgattaatcgattttatcgattaattcaaatttacagttaaggacaatgtgtttttatgaaaatcgatttttctctgagttttcaTTTTCACCCCCGACGCTCCTCTGTGGGCACAGAGTGAGCTTAGCtagctccctccctccctccctccctatttgtttttaagggtgtgtttatttatttattttttaagtttgagggtgcattgtgtcagtacctaaactatgttggagaaagctttctaaaagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242218 lncRNA upstream 4768 24291975 ~ 24293344 (+) False G178805
TU242219 lncRNA upstream 4768 24291975 ~ 24293344 (+) True G178805
TU242222 lncRNA upstream 4768 24291975 ~ 24293344 (+) False G178805
TU242192 lncRNA upstream 106855 24187986 ~ 24191257 (+) True G178781
TU242010 lncRNA upstream 778898 23516311 ~ 23519214 (+) True G178634
TU242294 lncRNA downstream 210741 24512588 ~ 24513208 (+) True G178844
TU242308 lncRNA downstream 284660 24586507 ~ 24587635 (+) True G178853
XR_002651474.1 lncRNA downstream 297026 24598873 ~ 24599611 (+) True LOC111195077
TU242343 lncRNA downstream 297028 24598875 ~ 24599608 (+) False LOC111195077
TU242351 lncRNA downstream 356560 24658407 ~ 24678663 (+) True G178873
XM_022681286.1 mRNA upstream 607757 23541850 ~ 23690355 (+) True LOC103037096
XM_022681285.1 mRNA upstream 783401 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA upstream 783401 23503307 ~ 23514711 (+) False ppp2cb
XM_022681284.1 mRNA upstream 800494 23494154 ~ 23497618 (+) True LOC103034079
XM_022680722.1 mRNA upstream 803812 23479537 ~ 23494300 (+) True LOC111188215
XM_007252428.3 mRNA downstream 145945 24447792 ~ 24451993 (+) True LOC103032894
XM_007252430.3 mRNA downstream 170359 24472206 ~ 24482883 (+) True gramd2b
XM_007252431.3 mRNA downstream 203790 24505637 ~ 24509580 (+) True phax
XM_022681293.1 mRNA downstream 222966 24524813 ~ 24542250 (+) True lmnb1
XM_007252433.3 mRNA downstream 222968 24524815 ~ 24542250 (+) False lmnb1
XR_002651470.1 other upstream 590263 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 1333123 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 1588555 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 1751982 22544640 ~ 22546130 (+) True G178352
XR_002651460.1 other upstream 1795953 22493440 ~ 22502159 (+) False LOC103022948
TU242273 other downstream 146033 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 200027 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 2612039 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 3222471 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 3222471 27524318 ~ 27525441 (+) True LOC103038954

Expression Profile