RNA id: TU242230


Basic Information

Item Value
RNA id TU242230
length 213
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G178809
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24150304 ~ 24169991 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataaaaaagtctctggaatataatcaagaggaagacggatgatcacaagccatcaaaccaaactgaactgcttggatttttgcatcaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaacagggttattccaccaaatattgattaatgaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242186 lncRNA downstream 19960 24130050 ~ 24130344 (-) True G178777
TU242184 lncRNA downstream 93448 24052788 ~ 24056856 (-) True G178775
TU242167 lncRNA downstream 427405 23722138 ~ 23722899 (-) True G178758
TU242080 lncRNA downstream 613601 23530994 ~ 23536703 (-) True G178686
TU242055 lncRNA downstream 635596 23503354 ~ 23514708 (-) True G178673
XR_002651471.1 lncRNA upstream 27210 24197201 ~ 24198148 (-) True LOC111195074
TU242263 lncRNA upstream 121901 24291892 ~ 24293344 (-) True G178823
TU242264 lncRNA upstream 121901 24291892 ~ 24292912 (-) False G178823
TU242313 lncRNA upstream 302441 24472432 ~ 24477519 (-) True G178855
TU242319 lncRNA upstream 335074 24505065 ~ 24509510 (-) True G178859
XM_022681288.1 mRNA downstream 71938 23706701 ~ 24078366 (-) False LOC103038694
XM_022681287.1 mRNA downstream 71938 23706701 ~ 24078366 (-) False LOC103038694
XM_022681289.1 mRNA downstream 213170 23706701 ~ 23937134 (-) True LOC103038694
XM_007255249.3 mRNA downstream 628668 23515252 ~ 23521636 (-) True ubxn8
XM_007255253.3 mRNA downstream 696608 23411183 ~ 23453696 (-) True wrn
XM_007233121.3 mRNA upstream 47181 24217172 ~ 24231664 (-) True apbb1
XM_022681290.1 mRNA upstream 47181 24217172 ~ 24231663 (-) False apbb1
XM_007233122.3 mRNA upstream 47181 24217172 ~ 24231663 (-) False apbb1
XM_022681291.1 mRNA upstream 64931 24234922 ~ 24249982 (-) True LOC103022888
XM_022681292.1 mRNA upstream 82143 24252134 ~ 24289293 (-) True LOC103023192
TU241888 other downstream 1193078 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 1209793 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 1477621 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 1613805 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 1613970 22536262 ~ 22536334 (-) True trnar-ccu_33
TU242520 other upstream 960991 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 1034838 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 3270240 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 3294048 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 3303364 27473355 ~ 27477978 (-) False ift46

Expression Profile