Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007252428.3 |
| length | 3058 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 2 |
| gene id | LOC103032894 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035916.1 |
| NCBI id | CM008319.1 |
| chromosome length | 36262418 |
| location | 24447792 ~ 24454622 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0017015 | regulation of transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0031065 | positive regulation of histone deacetylation | biological_process |
| GO:0048596 | embryonic camera-type eye morphogenesis | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0034333 | adherens junction assembly | biological_process |
| GO:0034111 | negative regulation of homotypic cell-cell adhesion | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0060828 | regulation of canonical Wnt signaling pathway | biological_process |
| GO:0016363 | nuclear matrix | cellular_component |
| GO:0000118 | histone deacetylase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0042826 | histone deacetylase binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU242225 | lncRNA | upstream | 145945 | 24298112 ~ 24301847 (+) | True | LOC111195075 |
| TU242228 | lncRNA | upstream | 145945 | 24298112 ~ 24301847 (+) | False | LOC111195075 |
| XR_002651472.1 | lncRNA | upstream | 146273 | 24298121 ~ 24301519 (+) | False | LOC111195075 |
| TU242218 | lncRNA | upstream | 154448 | 24291975 ~ 24293344 (+) | False | G178805 |
| TU242219 | lncRNA | upstream | 154448 | 24291975 ~ 24293344 (+) | True | G178805 |
| TU242294 | lncRNA | downstream | 60595 | 24512588 ~ 24513208 (+) | True | G178844 |
| TU242308 | lncRNA | downstream | 134514 | 24586507 ~ 24587635 (+) | True | G178853 |
| XR_002651474.1 | lncRNA | downstream | 146880 | 24598873 ~ 24599611 (+) | True | LOC111195077 |
| TU242343 | lncRNA | downstream | 146882 | 24598875 ~ 24599608 (+) | False | LOC111195077 |
| TU242351 | lncRNA | downstream | 206414 | 24658407 ~ 24678663 (+) | True | G178873 |
| XM_022681286.1 | mRNA | upstream | 757437 | 23541850 ~ 23690355 (+) | True | LOC103037096 |
| XM_022681285.1 | mRNA | upstream | 933081 | 23503307 ~ 23514711 (+) | True | ppp2cb |
| XM_007255251.3 | mRNA | upstream | 933081 | 23503307 ~ 23514711 (+) | False | ppp2cb |
| XM_022681284.1 | mRNA | upstream | 950174 | 23494154 ~ 23497618 (+) | True | LOC103034079 |
| XM_022680722.1 | mRNA | upstream | 953492 | 23479537 ~ 23494300 (+) | True | LOC111188215 |
| XM_007252430.3 | mRNA | downstream | 20213 | 24472206 ~ 24482883 (+) | True | gramd2b |
| XM_007252431.3 | mRNA | downstream | 53644 | 24505637 ~ 24509580 (+) | True | phax |
| XM_022681293.1 | mRNA | downstream | 72820 | 24524813 ~ 24542250 (+) | True | lmnb1 |
| XM_007252433.3 | mRNA | downstream | 72822 | 24524815 ~ 24542250 (+) | False | lmnb1 |
| XM_022681295.1 | mRNA | downstream | 138980 | 24590973 ~ 24596595 (+) | True | LOC103034699 |
| XR_002651470.1 | other | upstream | 739943 | 23703987 ~ 23707849 (+) | True | LOC111195073 |
| TU241823 | other | upstream | 1482803 | 22963447 ~ 22964989 (+) | True | G178485 |
| TU241665 | other | upstream | 1738235 | 22689001 ~ 22709557 (+) | True | G178388 |
| TU241624 | other | upstream | 1901662 | 22544640 ~ 22546130 (+) | True | G178352 |
| XR_002651459.1 | other | upstream | 1945633 | 22493440 ~ 22502159 (+) | False | LOC103022948 |
| trnam-cau_40 | other | downstream | 49881 | 24501874 ~ 24501945 (+) | True | trnam-cau_40 |
| TU243054 | other | downstream | 2461893 | 26913886 ~ 26916344 (+) | False | rnasek |
| TU243090 | other | downstream | 3072325 | 27524318 ~ 27525389 (+) | False | LOC103038954 |
| TU243091 | other | downstream | 3072325 | 27524318 ~ 27525441 (+) | True | LOC103038954 |
| TU244158 | other | downstream | 6687351 | 31139344 ~ 31151095 (+) | True | G180235 |
