RNA id: TU242294


Basic Information

Item Value
RNA id TU242294
length 587
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G178844
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24512588 ~ 24513208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATTGAGATTTAAACATGGTGACTCTTCCTTTAATAACACTGTAGAATAACAATAGAGAACTGTAGAATTGGATAACACTTGAAAAGCAGTAAACTACTCACCATCATACATCAAGGTGTCTGGATCTGTGGTATTTTTGAGTCATGATCAATATAACATGCCTGTTGTGTCTGCAGTGTAgctgtttaaatttcatacaatcactgtgtaacaatacaaaatatttcaaGAGTTACTCTGAATGAACAGATTACAAGAATAAAGGAACGTTAATCTTCACTTTAAGGAACTCtttagacattttaaacagttttcctAGGGTGCACAGCTTCAGCTGCAGACatggcagtgctgaggtaaagctGAAGTTATCCACACTATCATGATAAAATAtcatagcaaatatatatttttttgaaaatctGCCACTCTGTCCACAATGTTTCATCAGATGCCAATTTTCCGCACAATTGTCAACCATGTTGTGCAACTTgccatgacagggtggacacatGAATGACAggtaattataaataaaataaaaagtgcaattcagaaaaaaaagttgctagttttacttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242225 lncRNA upstream 210741 24298112 ~ 24301847 (+) True LOC111195075
TU242228 lncRNA upstream 210741 24298112 ~ 24301847 (+) False LOC111195075
XR_002651472.1 lncRNA upstream 211069 24298121 ~ 24301519 (+) False LOC111195075
TU242218 lncRNA upstream 219244 24291975 ~ 24293344 (+) False G178805
TU242219 lncRNA upstream 219244 24291975 ~ 24293344 (+) True G178805
TU242308 lncRNA downstream 73299 24586507 ~ 24587635 (+) True G178853
XR_002651474.1 lncRNA downstream 85665 24598873 ~ 24599611 (+) True LOC111195077
TU242343 lncRNA downstream 85667 24598875 ~ 24599608 (+) False LOC111195077
TU242351 lncRNA downstream 145199 24658407 ~ 24678663 (+) True G178873
TU242389 lncRNA downstream 282275 24795483 ~ 24817313 (+) True G178896
XM_007252431.3 mRNA upstream 3008 24505637 ~ 24509580 (+) True phax
XM_007252430.3 mRNA upstream 29705 24472206 ~ 24482883 (+) True gramd2b
XM_007252428.3 mRNA upstream 60595 24447792 ~ 24451993 (+) True LOC103032894
XM_022681286.1 mRNA upstream 822233 23541850 ~ 23690355 (+) True LOC103037096
XM_022681285.1 mRNA upstream 997877 23503307 ~ 23514711 (+) True ppp2cb
XM_022681293.1 mRNA downstream 11605 24524813 ~ 24542250 (+) True lmnb1
XM_007252433.3 mRNA downstream 11607 24524815 ~ 24542250 (+) False lmnb1
XM_022681295.1 mRNA downstream 77765 24590973 ~ 24596595 (+) True LOC103034699
XM_022681298.1 mRNA downstream 77765 24590973 ~ 24596595 (+) False LOC103034699
XM_022681297.1 mRNA downstream 77765 24590973 ~ 24596595 (+) False LOC103034699
trnam-cau_40 other upstream 10643 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 57966 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 804739 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 1547599 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 1803031 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 2400678 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 3011110 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 3011110 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 6626136 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 6919990 31433198 ~ 31433909 (+) True G180266

Expression Profile