RNA id: TU242351


Basic Information

Item Value
RNA id TU242351
length 2171
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G178873
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24658407 ~ 24678663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagctatttctcattttctgcaaataaatgctctaaatgacatttttttatttggaatttgggagaaatgttgtctgtagtttataaaattaaacaacaatgttcattttaatcaaacatcaacctataaatagcaaaatcagagaaactgattcagaaactgaagtggtctctttaatttgttccagagctatATACATCAGCTGTTGTTGGCATTTCACATCAAATTGATGTTAGCGTTAGACATCGTCCTGACGTGATTTTTAGTCACCTGATGTCACCACGTACATCCAACCAGAAAATATCTGTTGTCATTGGCGACATGTAATTTCCAATTAACTGCATACACCCAACTGTGATGTCCATACTGTGACATTTCAGTACGAATACACAAACCGTTGCACCCCTAGAGTGACATTTGGTAGCAGGTTTAATCAGTAACTTCAAAGAATCATTCCATTCATTGATGATGACATATCACCTGTCTTTATATATTGTAGAGTGCAAATGCAGAGCAAACctcaatttatttttgtaacgATGAAATGTTTAAGACTTACTCAGTATTAGATATTGGACAGGAGGCTGGAATGTctttgttgcttttttattttttttatttttgtctttttttttgcatttaggtGAGTTGATATTACCACTATCTTTGTTGAGAATCTGTATTGTCTGTACAACATTACAGCATCACTGTTGTTTTAGGATTTGTTTTAAGATTTGTGTTGTCTTTTAGTGTTTTATCTATACTAAGTTTAACCAAAGGTCAGAGTgccataataatgttttttttatctatattggctcttttgttaaatatatttatttagaacgACCATCCTTCAGTTCTGTTCTACGCAGCCCATGGTTTGTGCTCATCATcactaatgataaataataatagttagaCACACATAATTTACACACTTTGCTCTATGtaaacttattttaaactttattttattgacCATTTTTAAATGCACAAAATTCAGCATTATTTAATCTGTCATCTTAACCCAACGTAATATAAATAACCCAACATAATTTAACCACCCACAGTggttcttaaaaaaacagatctaaaatacagtaattaagaGTAATAATGCTTAAGCTGGACTTTTGCAGTGGAATTAAAACGAAAATGTTGGAAATGTTGCTGAGGGTCAAAATTAGCCCGCTtggtttttttgtttagttccaGATATGTAGATCAATACTTTTATATGTTTGTATGGAACGGTACAGAATGGACAGCCTCCAGTCTTAAACTACTCCTCTGAGCCAGATATTACATTTGTATAATTGTGTATATAGAATATAATGTacgtttctttaaaaaaatggggGAAATTATGTTTGGGGACTGAGTGCAAAATACACTCAACATTGTGTCTGCAgtttgtaatattattattattttacagtttacgCTACACAGAATTACTGTACAGTTCCGTATTTTAAGAGTCCCAGTCAGGAATTACTGTAGTATCAGTAGATTAGCTTCTGGTACTGTACGTTTTGGTACGGGAACAGTTCCTTCCCCATGGTAGCGTTCTCTCCCATAGTGCTGGAGTGCATGTAGCACTTTCTCCTGTTCTACAGAgtgtcttcctttcctgatggGACCTCCTGACTTTAacgttactgtatttttaatggCATAACAAATGTGTAAATACCTCTTTAACACGACAAATGTTGTTTAGAGGAAACTTATCAGTTTGTTTAAGTCAAATGACAAATGACACTTGCGTACATGTACATGTagatcattttaatgcattctTTCCTCATATCTCCAAGCAGTATTGACCACTTGAAGAAATCACGGTTCCAAAAGGCCAGTGCAGATTTGTGTTGACTGAACTGGGGGGGTACATAATAAGTGTTTCTGTAAATATCTACAGCATCTTTATTTTCCctactgttgttgtttttttttttttgtaagaacgATGAAATGAAATTGCACAATTGTCATTTTCTTCCCCAAAGAACACCCTTGACAATGAGATTTGCCTCGTACTACCACTTTTCtcacattatattgtattttattttccagtagcttaaatgttctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651474.1 lncRNA upstream 58796 24598873 ~ 24599611 (+) True LOC111195077
TU242343 lncRNA upstream 58799 24598875 ~ 24599608 (+) False LOC111195077
TU242308 lncRNA upstream 70772 24586507 ~ 24587635 (+) True G178853
TU242294 lncRNA upstream 145199 24512588 ~ 24513208 (+) True G178844
TU242225 lncRNA upstream 356560 24298112 ~ 24301847 (+) True LOC111195075
TU242389 lncRNA downstream 116820 24795483 ~ 24817313 (+) True G178896
TU242430 lncRNA downstream 282635 24961298 ~ 24962524 (+) True G178928
TU242456 lncRNA downstream 344377 25023040 ~ 25023262 (+) True G178938
XR_002651478.1 lncRNA downstream 345480 25024143 ~ 25029671 (+) True LOC111195079
TU242457 lncRNA downstream 345493 25024156 ~ 25029674 (+) False LOC111195079
XM_022681295.1 mRNA upstream 61812 24590973 ~ 24596595 (+) True LOC103034699
XM_022681298.1 mRNA upstream 61812 24590973 ~ 24596595 (+) False LOC103034699
XM_022681297.1 mRNA upstream 61812 24590973 ~ 24596595 (+) False LOC103034699
XM_022681296.1 mRNA upstream 63126 24590973 ~ 24595281 (+) False LOC103034699
XM_022681293.1 mRNA upstream 116157 24524813 ~ 24542250 (+) True lmnb1
XM_007252438.3 mRNA downstream 5414 24684077 ~ 24699125 (+) True prrc1
XM_022681304.1 mRNA downstream 47414 24726077 ~ 24739475 (+) False ctxn3
XM_007252439.3 mRNA downstream 47417 24726080 ~ 24739475 (+) True ctxn3
XM_007252442.3 mRNA downstream 83744 24762407 ~ 24809636 (+) False slc12a2
XM_007252440.3 mRNA downstream 83752 24762415 ~ 24816488 (+) True slc12a2
trnam-cau_40 other upstream 156462 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 203785 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 950558 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 1693418 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 1948850 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 2235223 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 2845655 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 2845655 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 6460681 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 6754535 31433198 ~ 31433909 (+) True G180266

Expression Profile