RNA id: XM_007252457.3


Basic Information

Item Value
RNA id XM_007252457.3
length 4002
RNA type mRNA
GC content 0.47
exon number 5
gene id thsd1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25293675 ~ 25303083 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCGCGTGCACGGCGCGGTCCTGACGAGCGCCCGGATCTCCAGCTTGATCTGTCGCGAGCTCCCCCACGAGATGAGCTCCGAGTCGCGCGGCGGAGTGACTCCCCTGATTCCTCCAGAACTGAGACCAAAtgtttgaatgaatgaatggcaGAAGAGAGTGATGCTgtgcgagagagaaagaagacacATGCGTCGGAATGACACAGGGTTTCACCCCACTGATCCcatttctgctgctgcttatGGGATTTGcaaTGGCCGGTCTCCATCTGTGGCCCTCAGTTCACGTTGCTCTGAGCAATGGCAGCGTTTTTGTCAATTACGACGCAGTCGGAAACCTGACGGACGAAGAGCTGGCCATGGCTTTGGTGGACATTGATAAGAATGTAACCGTGCTGACCAAGCCTCTCCAGTTTAACCAGTCTGGAGGCTCATTGGAGTTTGACTGCGCATGCTTCTTGTACGCTGGAAATTTCAGCTTCAAGATAGAGCAAAGAGCCCAGCAGGGCTCATCTAACAAAACATCTAGCCAGTGGTGGAGCCCAGTATTGCGAGTCCAGTGGCCCACTTTCCATCTTGGAGTGGAGCGGGCTAGCAACAATCACAGCTCAGACGCCTTTCAAATCGCTGTGTCCACTAATGACCACTTCCACGCCTGCTCCAGCAGCAAGACCTCATCCCTCTACCTGGAGGTCAGCTACCTGGAGCACAACCAGATCGGGAAGAAAAGCATAGACAAGGTGCAGAACCGCATGAGGCGTGACATCAAGGTCGTCAAGTCCCAGCAGGTGGAGCTGGACTGCGCTTCCCAGCTGACCGAACGTGGCTTCATCCAGGTGGCCCTCAAATCCCACCTCTCCCAGCAGGACATCAAATCCTCAGGGCCGCTCTACCTTTCCCGCATCTTTTCCTACAAGCTGCTGGTGGAGAACATCTACAGGAATGGCTGTGAGGGCACAGTGTCGGTCCGCCTGCTCTCCCCACCCTGCACGGTCACCACTGGGAAAGTGCTGCTGTATAAGGAGGTCAATACAGCTGCAGAGCAAGCAGATCCATCTCAGCTGGCTTTTAACTTCCTCAGCCAAGGCGAGAATGAGACCGAGTTTAACTGCTCTGTCTTCGACCTCGGCAGGAATAAGTACTGCTTCCATTTTGCCCTCATCTACAGCCAGTCTCCCAGTTCAGCACACACCTGCATCATCGTGCAGAGGAATGCTGTAGAGATCTGGGGCCCCTGGCAAACGTGGAGCGGCTGCAGCGTGACCTGTGGCGAGGGAGTGCGAGAGCGAGTGCGTGAGTGTCTGCTGCCTTCTAGTGGTGGCATGCAGTGCACTGGCCTGGTGAGAGATCAGTCACACTGCTCCCTGGAAGACTGCGCTGAGGACCTGCCTCCTCCTTCCTTCCCACCTCCTCCAGCTTTGCACTCTTTTCTGGGGGGAAATATGGTTGTGGTGGCCGGTATCTCTCTGTGTCTGGTGGTCATCTtgatcaccatcatcatcacagtTTGGAGGAAACTGTGCCACGCTCCAAAGTGCAGCTCGGTGCGACGTGAATCCATGCATTCTCCCAGCGGGCGCAAAAACTCAGACGAGGCTTCTATCTGTGGGTACAGTCTGCAGAGACCCAGTTTCTCGGAGAGTCTGCAGGCCACTGGACCTCAGAAAGGTCTAACATATCCCGGATCTGCATCAGACAAAGGTGTATTGGCTCGTCAACAGAGCCTTTCGCTACCTTTGCCCTTGGTCCAGGACCCTGAACGGTTGTCACCTTCTGGTCAAAAGATTCTGCCTCCGATTTTTGGTTATCGTTTGGCTCAGCAGCAgcttaaagaaatgaaaaagcaGGGACTTAAAGAGACCACTCAGGTCTATCATGTCTCTCAAAGTCCTATTGATGACACTATGTTGGAGGCCACAGCGTCCACGTCTGCTGGCTTGACACCAGTGCCTCAGGAAATGGAAAACCAAGAGGAACCCAATATTGGTCGCTTCCACCTTCCACCAAAGTCCCCTTTCTCAGAGCCGATGTGGCCTCACAAAAACTCTGCAACTCTGCCTGACAGGCTAAGCCCTAAGGTTGATCTGATACTGGGCACACCAAAGTCTGCCTTCAGTGCCAGGGAGCAGCGCCAGGAACGCACTGCGGACTGGGTGGCAATGGTTGAGCGCAGTCGACTCGATTGCTCCAAGAATCCAAATTTCAGGAGGACTTGTAGTTTCAACGAGAGCCAGCTGCAGCAGCTGCCTCCACCGCGTCCCTTCAGGGAAAGGAGCATGACCCAGGTTGCACCACGCCAGCTTCCAGAAGGCAGCTGCAGGACCAGAGCCTGGGAGCATCCCATTCCAGAGATGGAGGACTGGTCTCGACCCAAATATGGAATACCAGACAGCTCACGTGACCAGAGAAGGAGACCATGGGTGGGCACTCCACCTTCCCTCTCAAAATCCAAACCAGTTGCTGGAAATTTAGGGACTTCACCACCAACCAAAGATCCCCTGAACAACAGTCGCTCATTGGGCAGAGCACCTTCTTTGGGTATGGACAGAGTGGAGAGGGCAGAACAGAGCTGGAGCCGGAGAGGCCCTTCACCCATCCAGAGGAACATTCTGGCCAGGAAACTTCGGGAAGCCAACTCGTCTGCTAGCAGCCAGCGGCAAAGAAGTTCTACCTTTTCCAGCTCTGATCAGCGCAAGGGCCGCTGCAGGAGCCTTCCACTCTCTGCAGACTACAGTAACTCCTCTTACGGCCTGACTGACTCTGAGAAACGCATGATGGACATCTCTGGATACCTGGGAGAGGAGGATGGACTGGAGGTTATGAAGGACCACAGACTTACCTAATTTTATCTGAGCCTGCTTTTATCATGTACATCCAGCCTATATCCAGCTCATGAACTCTGAGTACTTATGTGCTTCTGAAGTGAATTCCCAAAAGCCTGATTGAtaggcatgaaaaaaaaacatcaaaatataTGGAATAATATGGAGATAATGTTGATAtaggtcatttatttatttatcagaggGATTAAATAgtgtatgtttttctttgtttgtttgttttgtcaaataaaaccacTATGTTTAAAATTGCCATAAAAAACATAGAGGAATTTGGatgagttttaaaaaattatgcaAGTCAGTGATTATGGAGCACAATTTTACATTGAGccattttgttttacattttgacagtGTACTTATAAATGAATTTCTtgaaaagtgcagaagaagatTATGTTATCGGACAAAAAGTAGTTGGACATCTGTGTCATGCTTACTGAATGTATGTGTTCTCTAATTGTAAGTTAATTGGCCTGATCAACTGTCAAAACAAgtagcatttattttaaacacattattccAAAATGGTAATTTTCTACttgacaaatatttttttctaatttttgttGCAAAGTGTCCAAATACATTCTGGGAGCCAATGcatgttatgttaaaaagaTTGATGATTTATGTTATTAAACAGTATTGATCAATTTTACACAAGGCAAACTACCAAGGCTAaattcaataatatatatttgtacgtAGGTAAAGTATATGTAAGTTATATAAGCATGTTATGTAAgaataatgttatatttacacCTGTTGTATTTCTTTGTTgtacattgttttgttttgtaaattttgttattttataatttacacttcgtaagcttaaaaaaaaaaggttctcaCATACTCAAACACCCTGacagttgtgaggtgttttccAGCTGGTAAGGTAGAATACTGGcaagcatgctcatggcaatgCAACGGGATGTTACTGATTTATTGATCTACTGATTTAGAttcattagaaaaaaacatacaaacattaaGACACAGCAATGGCTGGTTTAGtgttatatgatataatataatggaTCATTTTATCAATCTTTCACATAAaatagtatatacagctctggaaaaaaagagagcagtTAAAAATTCtaagtttctttaaatttacctaattaaaaacc

Function

GO: NA

KEGG:

id description
K24433 THSD1; thrombospondin type-1 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242672 lncRNA downstream 3784 25289115 ~ 25290939 (-) True G179075
TU242638 lncRNA downstream 15248 25260519 ~ 25279475 (-) False G179057
TU242645 lncRNA downstream 15248 25268081 ~ 25279475 (-) False G179057
TU242648 lncRNA downstream 15248 25268081 ~ 25279475 (-) False G179057
TU242632 lncRNA downstream 15383 25260519 ~ 25279340 (-) False G179057
TU242706 lncRNA upstream 35714 25338797 ~ 25358939 (-) False G179085
TU242707 lncRNA upstream 49498 25352581 ~ 25358841 (-) True G179085
TU242693 lncRNA upstream 60849 25363932 ~ 25441421 (-) False LOC103043022
TU242736 lncRNA upstream 164117 25467200 ~ 25467583 (-) True G179106
TU242770 lncRNA upstream 204463 25507546 ~ 25508333 (-) True G179129
XM_015606669.2 mRNA downstream 87337 25203325 ~ 25207386 (-) True LOC103025094
XM_022681306.1 mRNA downstream 116276 25170423 ~ 25178447 (-) False LOC103039311
XM_007252449.3 mRNA downstream 117191 25170423 ~ 25177532 (-) True LOC103039311
XM_007252488.2 mRNA downstream 242591 25046214 ~ 25052132 (-) True kiaa1024l
XM_007252443.3 mRNA downstream 314634 24962626 ~ 24980089 (-) True LOC103037512
XM_007252459.3 mRNA upstream 1365 25304448 ~ 25321697 (-) True vps36
XM_022681316.1 mRNA upstream 56149 25359232 ~ 25363323 (-) False LOC103043328
XM_022681315.1 mRNA upstream 56149 25359232 ~ 25363323 (-) True LOC103043328
XM_007252460.2 mRNA upstream 62542 25365625 ~ 25472244 (-) False LOC103043022
XM_015606674.2 mRNA upstream 62542 25365625 ~ 25472244 (-) True LOC103043022
TU242660 other downstream 87370 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 160567 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 2337497 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 2354212 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 2622040 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 2137148 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 2160956 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 2170272 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 2220051 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 2221245 27524328 ~ 27525388 (-) True G179583

Expression Profile