RNA id: XM_007252460.2


Basic Information

Item Value
RNA id XM_007252460.2
length 10165
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103043022
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25363932 ~ 25472244 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagggagagagagggagcgcgaGGGAGCGCGCGCGGGCAGGAGGGAAGAGAGGAGGGTTTAAAGGGAAGCAGGAATCTTTATAGGGTCTGAACTGAAGGCACAGTGAGGCACCTGGTTGATCCTGATCCGGATTTTTCTGCTAATATGATGTCATAAAGCATACTGTCCAGctgagaggagaaaagaagTCAAGACTCACTGCCAGGAAAGAGAAGATGTGAGATTAGATTTTTAGGTTTTCCCTCCACGGCTGAAGAGAAAGCCCTGCAGGCCCAGAAGGGAGAAACCCTTTAATGGATCCAGCGGTGCAGGGGAGCTGTTGAGAGAGAACATTTGTACAACATGAGTGTGCAAGAGGAAGTTGGGGTCCCACAAGATAGACTacatgaaaaaaagaacaacaacaagCAGCCTTTATATCCAGCTGACGGAGATGCTAATGCCAACCAAATCTCAATGGAGGAAAGCCACTATGAGGGTGACAGCCCTGTGCCTCCCCTGTTGTCCCACAGCAGTGCCCAGGAAAGGATTATCATTTGGGGCACACATGCCCGCAGTGAGGACCCAGAGCTGGAGGAGTTTGAATTATTAGAGTGTCAGGAACTTGAAGCATTTCTGAAGGATGCACCGCAGGGAAAAAAGAAGGACTTCCATCAGAGACGGTCTTCTCTTGCATCCTCTGAGACAGGAAACTCCTTAAGGACAGATCAAAATGCGAACAACAGTAGAGACATCGATTTAGATCAGACTGCTCAGCCGCTGGATCTCAGGACCTCAGTCTCTCGGTCTGGGCAAAGAAGGAGCCTGAGAGATGGACGTAGCGGCTCAGAGAACAATGTCTTTGTTTCTACCCTCTCAGCAGTCAGCAGCCTCAGTGGAAGCTTGGCCAGTGCCCTTGACAGTGCAGGACGCAAGCAGCCTCCCTCTTCTTTGCCTAGCAAGCCTACCTCAGACAAGTGCAGGATCCAGCAACAAGCTACACAGCAATCCCTCGTCTTCATCCCAAAACGAAGCAGGGAACAGCCCAGGGATGTAGACCAGAACTACAATTCCACAACACTGCCTCAGGAACCTTGTAGATCAAGTGCCAAGAATGGCAACTATCTGGCAGACCAGCAAGGGCGAAGTGGAGACAAGGAACAAATCAGGCAAGAGAGTAATCTCTCCTCAAAATTCCAGAAAAACCTTGAAAGAGTACCACCTTCTCGCAGGCAGCTTGTACGTCCACTCTCTCCCGAGACAGAGCAAAGGCTAACCTCAGGATATTTAGGACATACAGAGGTGAAGCAAGAACAGCGGCCATCCCGCTTCTCAGACCAGACAGGTCCAAAAGTTAGCAGCCATCAGACTGACCCCAAGGAGCCGGCAGAGATCAGCAGTAATGTCCAGTCTCATAGCGCAGGCTCAGGGATCCAAACCACCAGCCAGACCTGTGCCAGATCTGGCTCGATTCTCAGGAGGCAAGGATCTGCGGAGCATGCTGCCAGCCCTCTGGACAGGAAGAGCCACTTTAACCGCAGAGCCTACAGCAGCCCAACTAGACCCTCTACACCCCCTTCTCCCAAGACCACAGGATCTCCTCAGAAACGTACTCCAATGTCGCCTGTGAGGACCCGAGTGCCCGCCCGAGCTCCTCAACTAGGATATGGTGCTTCTCAAGCGTACAGCTCTGGCCTAAGGCCTCCAGTCAAAACGAACATAAACATGAGTGTCCAAAACACTGCACCCCAGCAAGGCTCTACTGAGACATCTCCACCCAAGTGCCCCCCAAAGCCCAAAAGTGTTCGCCCTAAAATAATCACTTACATCCGCAAAAGCCCACAGCCGAAGCCTCAGGTTCCCGAAGGGCCCTATGAAGTGTCTTCACTACCCACCAGACTCCTAGCCTGCAGCCCTGCTCCGAACTCCAAACCAGCCACAACAGTGGAATCTGATGGAGCTCCAGTGCTTAGTGCCTCCAACCTGCTCTATGACAAGTATCGTCAGGAGCTGCAGAAAGCCCACCTCTTCTCTCCTGGGATGATGGTGTCTGGAGTAAAGGCTCCCAGCCACACCATGCCCCCAAAAGCCACTGGCAAGACACACAGCTTCTACGGCTCTCTGAGCAACAAGTACCCGCCTACAGGGATTGGCAGGTCTCCGGCCACCCTCGGACCACAGGCTTGTGGAAGCGAGGATCCACCAGAAAGCCTGATCGTAACACCAGAGACAGGAGCTGTTTTCCGGCCCCCGCGGACCCTCAGACCACAGCTTGGAGTGGGTGCTGTCAACAGGGCTCCATCCGCTGCTGCTAAGACCAGGATCTTTACAGGGCAGAAGTCACCTCTGGCTCTCAATCAACCAGTGCAGGCAGTGACCCCATCAGTGACTTTAGCAGCGATTCTCCCAGCGACCTCATCAGTGACCTCATCAGTGACCCCATCTACGCACAGCCCCCCGGAGCCTTTAGatcaGAGGaaggcggcagcagcagcagcagcagcttcaggttTGCCTGTGAAGTCCTTGCTGCCCAAGCCGGCTCAGTCGGGCCTGCGTCCCCCTGGCTACTCCCGGCTGCCCCCAGCCCGCCTGGCAGCCTTTGGCTTCGTCCGAAGTTCTAGCGTGTCCTCCGTCTCCAGCAACCACTCCAATGACAGCAGCCGCAGCGACCCATGCCGACCAGCGTACCGTCCAGGGAGTGTGAGTGATGACCCTCCTTTCCACAGGGTCATCACGGAGCCCTGCACAGACAGTCCCAGAGCCCCCAGCCGAAGCAGTCCACAGCCCCCCTGTACGCCCGTACCCACTCGCCGCTCACTGCTGCCCCCTCCACCAAGCTCACCTGCAGGCTCTCGTAAAGACTTCCAGAAGACGTCTGACAGCTCTCGTTCGGCACAGTCCTCTCCAAAACGACTGGCTGTTGTGACACCCAAACCCCAGTCACCAGttCTACAGAGGCAGagggcagcagcagctgcagcagcacggGTTCCCAGGGGACCAGGCGTGCCAGTTTTGGGACGCAGTGAATCCCCGGGCCtggagaaaaggaaagaggaGGCGCAGAGAAAGGAGAAGGAGCGagaggagcaggagaggagagaggaggaggtgCTGAGGCTGCAGGCTCACTGTGAGGAGCAGGCCGGGCAGCTGCAGGCTCTCCGTGCTGAACTGAAGAGGAGCACGCTGGGCCTGGACGCCTTCGCCGTCTGCAGCCAGCACTTCTGCCTGAAGagTGAGAATGCAGAGAATAAGGAGAAGGACTTGTCTCTTCAGCTCAGCCGGATTCGAGAGGAAGTGGACTGCACGGCTGCACGCTGGAAGCAACTGCAGCAGGAGAAGGCTGAGCTGGAGCGAATGTTTGAGCAGAAGCTGAAGGAGCTTCAGGAGCAGCAGGAGTATGAACTTGCAGCTCTAGAAGAAGACCTTAAGACCCGTCATGCCTCTGACACAGACCACCTGAAAGCTGAGCACCAGTCACATGTGGAGGAACTGCGAACCCAGCAACAGgaacagATTGAAGAGTTAACAGCTCAACACGAGTCTGCTTTGGTAGACCTGAGAACAATGCATAACATTACAATGGCAACCTTGCAAGAGGAACATGCCAGAACCATGAGAGACCTGAGAAAAGCCCATGAACAACAGAAAGCTACATTAGAGGACGACTTTGAGAAGCACAGACTTTCTTTACAGGATCAGGTGGACACCCTGACGTTTCAGAACCGAACCCTGCGAGACAAAGCCAAGCGCTTTGAGGAGGCATTGAGGAGAAGCACAGATGAGCAGATTGTGgACGCTCTAGCTCCATACCAGCACATTGAGCAGGACCTGAAGAGCCTGAAGGAGGTTCTGGAGATGAAGAACCAGCAGATTCATGACCAGGAGAGGAAAATATGCCAGCTTGAGAGAGTGGCTCAAAAGAATGTGTACCTGGAGGAGAAGGTGCAggtgctgcagcagcagaacgAGGATCTGAAGGCTCGCATCGACCGCAATCTTGCCCTGTCCAGGCAGCTGTCTGAGGAGAATGCCAACCTACAGGAGCACGTGGAGAAAGAGTCCACTGAGAAGAAGCGCCTGAGCCGGAATAACGAGGAGCTGCTCTGGCGTCTGCAGACCAGCCCTCACCTCTCGCCCTCCTCCTCTCCCAGCCACAGGGCCTTCTTCCCCGGGCCAGACATTCCACCCTACCCTTACTCCCCGGGCCCTGGTACCCCTACTCACTCTTACTCCCCTGGACCCTGCACCCCTACACACAGAGTGGTCTCTCCCATATCTGGGACCCCCACCCACAGAGGCTCACCAGCAGCACGGTGCTCTCCTGCACGTGTCCCAAATGCCAACACCCTACCCAGATAAGCTCTACAACATAAAGCAAACTACTCAACTCTACTTTCTCCTCCCTATTTTACCTCTCTGTCCtctgttttgttcttttgttctaTAGTGCTGAACGTTTCCATTGTTGCAGAGAAGATTGTTCTCCATTGGTGGGTTTGGGGTTCACAGTGTTGCaattttgtaaatttaatgAAACTGGAAAATCTGCTTCTTTGCAGGAAGCTGACCCCAGTTAATACCCATGAATGTCACTTATCAGTAGAACTGATATCAAATAGGGGTGTAAACAGTTCAAACTTGAAATGGTTAGCTGGAAATGAGATGAGAACTgtttacaaaactaaaataatgaattCTGTTAAACAACAAAGGTGTAAAATTCTGCTAAAAGACAGTGGGCCAATGTCTAAGTCAGTTTCATTTTGACCATATTCAAAACAACATACTCTACACTATAGAGTACACtgcatactgtacatatattctCAGCTTGTATCCCCATTTTTGCCaaaattcactttttgacatgtgaatctggcagttgttttttatgttgttttcaaATTTCATAATGAAattgaaaaataacatttttacatcAACTTTCCCTTTCGAGAAGGTTCTGTAACATTTAATTTGATGCCATACCTATAGGGTCACAGGACCACAAGGATATCACAATTACAGTTGTGACTGCATACTGAAATAAtatgctgcattccatttacGTCTGATGTCACATATTGGAAATTACTGTGTGTATGATTTATTCAATGAGACTTAAATAGATATGGgataaaaacagtataataCTACTGTTTTTACTACTAATATTTTAAACTCGTGGTTGGTGCGGTTCTCACAACTTTCCGAGTAAGAATTCCAACCTGTAGGAGTATTCCAGTTTTAATTTTGACTTTCCAGTTCAAATGGAACATAGCATTAGTATGTGGTCCTGAAATGTTTGCTGTGCTATGGTATTTGGTCACATTTTGGTAGTATACTGCATACATACCAACATTTATGCACACAAACATTCCATAAAGGTATGGCATACAGGAAGATTTTTCCCATAAATACTGTAGTGGTACTCCTGGTTCAGtgttgggcttttttttttttttgctcattttagatttgcttattttaaattgAGCTCTTTTGCCTATTTTATGTTAGGTTACTTAGTTCCCAATTTAAAGAATGGCAAGCTGAGGACAGAGGGTAATGACAGAATGTTATACTATAGGAAAAGCCTTAGATATCTGCCCCATACTCTTACCACCTTTTTGCCAGACTACTCAATACTCAAGACTACCAGCAATAATCCAGAAAACTTAATTTGTTCTGGATTTCAGAGCAGGAACATTAATCATGATAATTATATGTATTCTCATTCGTTctgtattttgagattttttagAAATATTCCTGGGTTATGGTTGGTGTCCTTCAGCTTTGGCACGCCCCAATACCTGGCTGCCAAAATTGTAAATTAGTCTCATGCAAGATGATCTGAAATTCATTTGGAGAGACGCCTGGAGGTATAAACCAAGACTGTCGATTGAAATTTAGAATAGCACATAAATACTCTTGTATGGCATCATATGTCATACTTATACACTGATttgtagatacagtatattcaagTGTATGATCCTTAACATTTGTCATGTTTATCCCGGTTGTTTTACTGGGCTGACAAAGTCTCAGGCACACTCCCTAAAatactaaagttacaaacagaGGTTAAAGACCATCAAAGGCATGTAAACTACGATGCTAAAAAAATCAGCTCAAGTTTATCTTTTGCTGGTAGCTAGTCTAAGAACTAAGTCAAACAAATATATACCTTATATTGCAAGCTAGTTGGTTAGCCAGCTATTGatttttatagtgtgtgtttaaacTTGATTTTGAAAatgcttggtcatgttggtcatacTGAGTGTCTAGCTTGGTGAGGATGATCATGTTTGTACAGCATTTAACTGTCAAACTTACGAGCTTGACCAGCTTAGGTTggccaggttttttttttttcagtcactaAAACAGTTAATGACAATTTAGCAAAGCTAGTAGTAAATGGTTCTCTGCTGACATAATGTAAACAGATTCCTAAAATGCAGAGATGTATCAGGTAAAGGTTTAATTTAACTGATTGGAACATTACTTGAAAAGGTACTTAATGTTAACAGGTGCATGTATTGTCCATTGTCTTTTTCAAAAAActgttagctaagttagctagctagctactttagcAACAAGCTACTTAGGCTAGCTAATTCACCTAGGCTAGTAATTCGGTCAAGTACGCCTAAAGTTAAGCAAATCGACTGTGTCATATTGATCACAAAAATACCAGCACTGGTTTCAGCAGTGCACCATTTGATTATGTCTTTAATAGCCTATGTGTATCTataaaattacaaagaaatCCCTTTGTGGTAACAAGAATCCTGATTGTAGCTTTATATTTAAGCTGGTTGTAATCTAGTAGAGCCAGAGCTGGTTTATGGAGAGCCATGGAGTCCTCAAGTGAGTCCTGAATGAATGGAAGTAcacggcaaaaaaaaatatatatatatataaatattaaatatatttaaaaaaaaaatatatctaacTACTGTACTTTTCAAGGATATTCctcattttagaaagtagaaggAAGTATTTTGTTTCAAAAAGCTAAATCTTACCTGTctatttccatttttctacaGCAAACAGACTTTAGCCAATACAGatgctagcattactgctacaaTGTgcttaaaaaaggttaaaaggcTTAAAACTGGAGctgagaatattttaaaattatgtcCGCAGTAATTAAAAATCGATAATGTGTTGAGAAAATTAGtaaattttacagtataaaaactaaaaaaatgacataCTGTGATTTTGCTCAAATTTCCTATTCGCCCTTTTCCACCAATGTGGAACTGTTTGGCAGATTTCCAACAACAAAAATAGCAGTTCTTTTGTTTAAAAAGGCTTTATgtgaacccattcattttggacccACTTGTGAGCGCCATCTAGTGTCTGACCATCCCCAGAACACATTCTTAAGTCGGTATTCTCCTCACAGAATTTCACTGGTTGAGCAACAATTTGAGtgtcaaatgttttttgtttgattgtttttttttttactgaattgtCAGCTTTGGCAAATGAGTCCACCAAATAGCGGACGATGCTCAGCTGACAGCTGTAACCTTGAACTACAcaatacttattttattgttttatttatatatttagttatcttttttgggggggaaatgCTGCATCTGCTCTGGTCTTCCAGTCTTGTCTGTAATGGCCGCCGCTCAGGGTCCTGTCCCTCAGGTCGCCATGCACACTTACTTCTTAAGCATCTGCTACACTTTATAAACTGTATAGACTGTAAGTGCTGTCTTTCAGCATTCagttcacaaacacacacaccaaacagaaAACGGGGAGGTGTAGAGTATGTAAAGATACCGACTACAGGAATTGTGGTTGTAAATGTTGTTGTCACCATTTTTACTGGTAATATTTGTAAGGTATTGTAAggtaactgattttttttttttcgctatGTGCATGTGTTGTAAAAGTCTTCCAGTCTTTTTTTGTGAAACTTGGGATTGTGTTGAATGTAGATAGTAATAGGATCATGGGTATAAAAATGCTCATATCCGTGCTAAGAAGACGAGACTGGGAATGAACCACACCTCAATAGTGAGCCAATATCACCTTTTTACAAATGTACTACTGTTTTACCAATGAAGCTAATGTTGACTAATGGAAGTTGTTTCTATTGTAGTTGTAGTAACCCTTAGTATTACCTCTGTAGAGCGTAGCATTATTTAGAGATAAATCTCTCTGTATGAATAAACTAGAAAGGAATGTAGCCTAATTATATATCTTACAATGGTGTTGTACTTTTAACGTTCagggattttcttttttgtcagtcagctagacttttttttttaataacaaaatGGCATGTGTCTTTTCATCAGTAGATTTAATAAAGATACAATCAGTATGTTTTTAGAGccaacatacatttttttatagcaATAAACTAGTATGTCTCcccttatttaaataaattggtGATATGATTCATTTGCACCAACTTAGTGAACCGATTAAAGATATGccgtaataaaacaacaaagaattTGTTCGAAAAGCTTACTGACGGTACCTTTAAAACAGTccaggttttttttatgtttgacagAACATTAGCTGTCAGGAATTGTCCTCCCCTCTTCCCTCATTTTTGGATTCTTCAGAGCACTTTTTGAAATtggacattttattttgtatggtAGAACTAGCGGTCCAGCATATTGTTACCTGTTTCAAAGGTAACTCACTTTCAGATACCAATTTTGATACTGTTGTCCAAGAAATTTGTCTCATGTTTACTGGTATGTTTTTCTAcaatatcaaatgttttaatGGTGCTTTCACAGGGTATTGTACAAACCGGTACAAAACTACCCGAATACTATCACTCGAGACCAGCTAACAAGTCTGAAGTGCTGTTTTCCGTCAGTTCTCAGTTCCACAGCATACAGTATGTACGTTCTATGGGCATCTTTGTTTATCGATAAGGGCAGTCTGGTAGGAATgagaatgttgttgtttttttgtttgttgtaaaagcctttatttttttatattacatggATATATTTTTGATTGTGTTCATTCTgatttcagttttaaaaaaactgcACGCTGTACAGTTGCTTGATGTTTAATATGGTACAACAttctttataatgttttaatgttctgtCTGTTTTATATGAAGAGTTTCCGTTGTTGGAATTCTTTTAAAAAGCAGACTAGTGTAATGTCATGCAGCCTCTGTTTTTGCTACTGGGAcctgcattaaatgtgcatGACAGCACCTATATGTCATTATAGCATAGTTTTCTTCATCAATATCCTTATTTAGACACAGATAGATATagactttatttaaactctACACAGAATTTCCCTTTTTCTACAAACAGCTAATGAAATGCAACTTAATTCATGcaaaaaacacagttccacatgACACATATTGATATATTTGGATTAATGTGCCTTGGTTTAAAGTACAGTAGCAAAAATGGAGGAGATTGTTAACTATGATGTTACAGCAGTCTTTTGGAAGTGTCAGTGATCAGGATAAATACTGTAGATTATTCAAATATCTTATTTattcaacattttattttatttgttacattttatttaaatctgtCCAGAACCTCAGCAACCtcttaaaacaagcaaataagGATGTTTTTCTTGGAaatcttttaaatttaaaagtacaATTGGAAAACTCCAGAACTCTATCTCCAGAATTATTGATGGCCATTCTGGGtgcaattttaaataaattcatgAACTTTTCAAGACAAAGTGTGATACAGGTAtacaaatattgtgattattcaatattgaataaatgaataaagaccCAAAAATTCATACTCAAAACATCCTAGTTTGCCCTTTTTAAACTATTGAgaaaatattgaatatattaaAATTGAATATACTACAGACCACTTATATATGCTCAAAAAGTGAATGCTTGGTGTTTTGTACCTTTTATGAATACAGTTTCCCTGTTTTATATGAACTCCCCTGTTTCTAGGAAAGAGTTGATCTTTCAGAATGAATTATTATAACTATCTATGAGGGATTGTTATTATAATAGCCCTAAATGAATTAGACTCAGTGTTAGTAAATCAGGGACTGAGGTTGTGTCTGTGTCCTGTAGGcgtttttacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242706 lncRNA downstream 6686 25338797 ~ 25358939 (-) False G179085
TU242707 lncRNA downstream 6784 25352581 ~ 25358841 (-) True G179085
TU242676 lncRNA downstream 70508 25293675 ~ 25295117 (-) False thsd1
TU242672 lncRNA downstream 74686 25289115 ~ 25290939 (-) True G179075
TU242648 lncRNA downstream 86150 25268081 ~ 25279475 (-) False G179057
TU242770 lncRNA upstream 35302 25507546 ~ 25508333 (-) True G179129
TU242766 lncRNA upstream 112212 25584456 ~ 25671080 (-) True G179126
TU242813 lncRNA upstream 184011 25656255 ~ 25704264 (-) False LOC103047293
TU242828 lncRNA upstream 406405 25878649 ~ 25878946 (-) True G179178
TU242861 lncRNA upstream 583000 26055244 ~ 26056126 (-) True G179193
XM_022681316.1 mRNA downstream 2302 25359232 ~ 25363323 (-) False LOC103043328
XM_022681315.1 mRNA downstream 2302 25359232 ~ 25363323 (-) True LOC103043328
XM_007252459.3 mRNA downstream 43928 25304448 ~ 25321697 (-) True vps36
XM_007252457.3 mRNA downstream 62542 25294723 ~ 25303083 (-) True thsd1
XM_015606669.2 mRNA downstream 158239 25203325 ~ 25207386 (-) True LOC103025094
XM_007252465.2 mRNA upstream 7944 25480188 ~ 25506865 (-) False LOC103044157
XM_007252464.2 mRNA upstream 7944 25480188 ~ 25506865 (-) True LOC103044157
XM_022681317.1 mRNA upstream 7944 25480188 ~ 25500537 (-) False LOC103044157
XM_007252466.3 mRNA upstream 36478 25508722 ~ 25522398 (-) True LOC103044637
XM_022680724.1 mRNA upstream 184030 25656274 ~ 25864474 (-) True LOC103047293
TU242660 other downstream 158272 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 231469 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 2408399 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 2425114 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 2692942 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 1967987 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 1991795 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 2001111 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 2050890 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 2052084 27524328 ~ 27525388 (-) True G179583

Expression Profile