RNA id: TU242813


Basic Information

Item Value
RNA id TU242813
length 937
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC103047293
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25656255 ~ 25864474 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAGGGTGCACTGTGGCGTTTAATAACTACTGCAGCTAGCAGCTCTGCTTCTCAGACAAGCCACGATTCCTCTGTCTCATCCTTTTCACCCTGTTTACAGATACAAGATCCAGCTCAACTCTGATGAGGTGAGGTATGGTGGACATGGGAGAATCCAGAGTGACACAGAGTTCTTCACTGAACCGATGGCCTTCAGGAACCAACTGCGTTCATTTCTGATTTACATTCCATGCAGAACAGCTCTTGTTCTAGCTAATGAAGACCATGATTATAGCCGCTGAATGCAGCCTGTGGATGGAGTCCAGCTGAGGTCGATACCCTGCAGTCTGTGCTCATTTAAAGCAGGATATTTTGCAGCCATTCGTTTCCGAAGATAAGTGCGACTTCCATTATCCCATGAGCCAAAACTGGATAAGCCTGACCTCCTCTGTTTACAAACTAACCAAAATATGAAACATCTTTCAACAAcagcttctctctcttttctatctgTTGGTTTGCGCTTTTTCCAGCTCCACCTGCAAATTTGACAAGGACAACATGCCCCAGTTACTTCCCtcagcattgtttttttgttttttttttcttgtaaagcGCAAGCTGCTGCTTTATTGTACCTAAATGAATTCCTGATTCTCGCTTTATGCTTCCACAAAAAaggatgttttgttttgttccatAAAAAATACAGATCAACTAGCACAATCGCCTACCCACACCACCCTACAATctgtgctacacacacacacacacacacacacacacagtcgctTCCTGTGCTGAGAATAAACACCATGTGCTTTGCTGGAAATGTGGCTTAGCTTTAGCTGCTGATTTTATGCGCTGGGCTGTGTTGCAGTGTGAAAATGTTTTCAAGcaaatggaaaattaaatgagtaatttcactgaaaaaaaacagtgtttttttattttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242770 lncRNA downstream 147922 25507546 ~ 25508333 (-) True G179129
TU242736 lncRNA downstream 188672 25467200 ~ 25467583 (-) True G179106
TU242693 lncRNA downstream 214834 25363932 ~ 25441421 (-) False LOC103043022
TU242706 lncRNA downstream 297316 25338797 ~ 25358939 (-) False G179085
TU242828 lncRNA upstream 174385 25878649 ~ 25878946 (-) True G179178
TU242861 lncRNA upstream 350980 26055244 ~ 26056126 (-) True G179193
TU242966 lncRNA upstream 431269 26135533 ~ 26188341 (-) True G179288
TU242977 lncRNA upstream 653719 26357983 ~ 26358360 (-) True G179297
TU242984 lncRNA upstream 863380 26567644 ~ 26568070 (-) False G179304
XM_007252466.3 mRNA downstream 133857 25508722 ~ 25522398 (-) True LOC103044637
XM_007252465.2 mRNA downstream 149390 25480188 ~ 25506865 (-) False LOC103044157
XM_007252464.2 mRNA downstream 149390 25480188 ~ 25506865 (-) True LOC103044157
XM_022681317.1 mRNA downstream 155718 25480188 ~ 25500537 (-) False LOC103044157
XM_015606674.2 mRNA downstream 184011 25365625 ~ 25472244 (-) True LOC103043022
XM_007241494.3 mRNA upstream 1048628 26752892 ~ 26782177 (-) False ltn1
XM_007241493.3 mRNA upstream 1048628 26752892 ~ 26782176 (-) True ltn1
XM_007241490.3 mRNA upstream 1090130 26794394 ~ 26799253 (-) True LOC103046333
XM_015602137.2 mRNA upstream 1106766 26811030 ~ 26815128 (-) True LOC103031551
XM_022681322.1 mRNA upstream 1118475 26822739 ~ 26825856 (-) True LOC103023750
TU242660 other downstream 448902 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 522099 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 2699029 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 2715744 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 2983572 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 1735967 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 1759775 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 1769091 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 1818870 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 1820064 27524328 ~ 27525388 (-) True G179583

Expression Profile