RNA id: XM_007236203.3


Basic Information

Item Value
RNA id XM_007236203.3
length 2162
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC103024073
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26830637 ~ 26879083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGACCGAGTTTCAGCGCTGTgtgctgctactgctactgtaggaggaggaagaaggagaaagaggacGGAAACTCAGGCAGGAAAGTGCATATAAGTACCCTAGAACACCCCAGTCAGACTGTATTACTGTACTGTAGATGTATGGAGGGGTCTGGGGTCTATTTACACTCCTGTAGAAGAGCATGTAGAGAAGGGATGACTGAGGCGCGAGTTCACAGATGGGGAGGCTCCGTGTTGCAGTGGTGGGTGCGGGGGCCGCAGGGCTGTGTGCTGCCCGACACATCTTGTCTCGACCCAAAGCGTTTGACCCCCCGGTGGTGTACGAGCTGACCGACCACGTGGGTGGCACGTGGTTCTATGAGGAACGTGTGGGCACGTACGACAATGGCCTGCCTGTCCAAAGCAGCATGTATAGAGACCTCAGAACGAACCTGCCTAAGGAGGTTATGATGTTCCCTGATTTTCCCTTCGACTCCCACCTGCCCTCTTTTATATCCCACCTGGATGTTCAGCAGTATTTGGAGAGATATTGCGAGAGTCATGACATCACACCGCATTTAAAGTTCAACACCGTGGTGGAAGAGGTGAAGCCCATCTCCATGGAGACGGAGGAGGGGGGAGCTGTGACGTGGGAGGTAATTTCGCGTGGCATGTACGGAGGGCACAGCACACAGACATTCGACTCGGTGTTCATCTGCAGTGGACATTACTCCGTGCCCCACCTGCCCTCCATTCCGGGAATAGAGCATTTTAAAGGAAAGGTGATGCACAGCCACTCTTATCGCTCTCCAGAGCCATTCGCCCACCAGTCTGTCGTGGTTCTGGGTGCTGGAGCATCTGGAGTTGATATCTCGCTCGAACTGATTCAGGCTAAAGCTAAGGTGACCCTGAGCCATAATAAGCCAGCTCTGCAGTCCTCCTTGCCCCCAGAAATCCAGCATGCAGCCCCTGTGGTGAAGGTCTTGGAGAATGGCTCTTTGCAATTCCAGGATGGATCTGTGGCCCAAGCTCAAGTTCTTCTGCTTTGCACTGGATACAACTTTCACTACCCATTCCTCTGCCCCAAACAGCTTGGCCTGGAGGTAGAGCACCACCTAGTGGCTCCTCTGTATAAGTACCTGCTGCCTCCAGCCTTCCCCTCTATCTTCTTTGTAGGCATCTGCAAAATCATCTGTCCTTTCCCTCATTTCGATTGTCAGGTCCAGTTTGCACTTGGAGTCCTTGAAGGCACGGTTCAGTTGCCCTCATCTAAAGTGATGGCAGAAGAagctgaaaaagagagacagaggaagacaCAGAAGGGCGTTCAAGTGAAACACCTTCTGCAGATGGACTCAGAACAGTGGGCGTACTACCTAGACCTGGCAACCACAGCAGGCTTCCCACCTCTGCAGCCGGTTATACAACGTCTTTATGAAGAAGTAGGAAAACAGCGCCGGGCGTGCCCTCAGGCTTACAAACACATGAACTACAGACTTGTTGATGCCACACAATGGCAGCTTCTGTAAACACCATCTGCAATGACATATAAGGTTTAGTTCAAGTCGCAGGACCAAGAGAAAGTGACTGTAGCTGTTCCATCCATCAGCTAACTAATCGTGACCTTTCTAGTATCCACTACATTCATGTAGTCTACTTCTGTAGAGATGCTGTCTTTGTGAAGAAAGTACTGTCATATTAAACTTGACATTTAACATTCTCAGTACGACTGGAAAGTCGCACTACCACAGGGAACAGATCCATGAATAGGATGAATATTAAATGACTCTGCAAATCCTTTGGGAATAGTTGTATCAGGGCCAAGATTAATTCTTTTACTCATACAAATGAAAAGGACACTCTAAGGTAGTGCATAGATTACACAAGTATTTAATGTCATTACTATGGTGAGTGACTTTTCAAAtgcaaatgtaatatttacacGTTTCACTAATTAGTGTGATTTTCTTTGGtgttattttaccaaaaaagacactaaaactgttaaaaaattgTGCAGTTTCTATTAACATTagtgtataataatgtataaaggGTTTAGCTGATTAAAAGtccttttcttttactatttttcatttcatcttattttgttgtatttacaaTTGATTTACATGAAATTTCACTCTCTTctttctaataaataaaaaactacagGCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243024 lncRNA upstream 19588 26852695 ~ 26852983 (+) True G179335
TU243016 lncRNA upstream 31324 26830637 ~ 26841247 (+) False LOC103024073
TU243004 lncRNA upstream 73369 26794403 ~ 26799202 (+) True G179320
TU242912 lncRNA upstream 471304 26401008 ~ 26401267 (+) True G179239
TU242842 lncRNA upstream 903779 25965763 ~ 25968792 (+) True G179183
TU243037 lncRNA downstream 5333 26884416 ~ 26886339 (+) True G179345
TU243038 lncRNA downstream 5333 26884416 ~ 26889099 (+) False G179345
TU243039 lncRNA downstream 5333 26884416 ~ 26886339 (+) False G179345
TU243042 lncRNA downstream 5333 26884416 ~ 26889099 (+) False G179345
TU243043 lncRNA downstream 5333 26884416 ~ 26889099 (+) False G179345
XM_007241491.3 mRNA upstream 79071 26783048 ~ 26793500 (+) True nle1
XM_007252480.2 mRNA upstream 181569 26081795 ~ 26691002 (+) False LOC103021428
XM_007236206.3 mRNA downstream 1566 26880649 ~ 26896187 (+) True LOC103025645
XM_007236205.3 mRNA downstream 1572 26880655 ~ 26896182 (+) False LOC103025645
XM_007236204.3 mRNA downstream 1574 26880657 ~ 26896182 (+) False LOC103025645
XM_007236207.3 mRNA downstream 18387 26897470 ~ 26902329 (+) True LOC103026363
XM_007236208.3 mRNA downstream 18387 26897470 ~ 26902329 (+) False LOC103026363
trnam-cau_40 other upstream 2370626 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 2417949 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3164722 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 3907582 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 4163014 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 34803 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 645235 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 645235 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 4260261 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 4554115 31433198 ~ 31433909 (+) True G180266

Expression Profile