RNA id: TU243090


Basic Information

Item Value
RNA id TU243090
length 1072
RNA type TUCP
GC content 0.48
exon number 1
gene id LOC103038954
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27524302 ~ 27525441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGCGGAGAGCTCTCTGGTGGCTGGTGCAGCACtgctgttataataataatactacaaCAACAAAGAATTTGTATACAAGCGAGACAGCTGGTAGTTCAGACATGTCTGGAAGGGGGAAAACCGGAGGCAAAGCTCGGGCTAAAGCGAAGTCTCGCTCTTCGAGAGCAGGGCTCCAGTTTCCAGTGGGTCGTGTCCACAGACTGTTACGCAAAGGGAATTACGCGGAGCGCGTAGGAGCCGGGGCTCCTGTGTACTTGGCCGCGGTGCTGGAGTACCTGACGGCTGAGATCCTCGAGTTGGCTGGAAACGCAGCGAGGGACAACAAAAAGACCAGGATCATCCCCCGCCACCTGCAGCTGGCCGTGCGCAACGACGAGGAGCTGAATAAACTTTTAGGCGGTGTGACCATCGCCCAGGGTGGAGTGCTGCCAAACATCCAGGCCGTCCTCCTGCCCAAGAAAACGGAGAAGCCCGCAAAGAGCAAGTAATCAATCATCGGCTTTTGTGAGCGAGGACATTGGCATATAACGGCTCTGTAAGGAGCCCCCATTTTCAGCAGAAGGTGTTGTTTCTTGTTCTTACTTTTACGTTGCAGTGTGTTGTTCGTTTTCGTTCTGCGACGAAAAATCTAAACTAAACAATGCTTCATGTACACTATTGATTTATAAcctatatgtattattttttgctgttgATGTTTCCTGGATGAttccctgtgtgtgtatgtatgtatgagaaGGACACTAGcactagctaaaaccaacactgGCTATAAAAATGGCCGAGGGACGCGTTTCAAAACAACTTgctgttaaaacacacacaaaggagGTGAAGGTCCTGgcagcctgctgctgctgcgctgcACCCTTCACAGAccatgatgattatgatgaggATTATTATTATGGACCAACGCTGGTTACCGTCGTCTCTGTCACGACCTGTTATTAATGACTCTCTATACATATATCTACTGAACCGTGAACCTGTTTTATGTTCTGTTCTCCCCGCTGTTTTAACGTTTGGTTTCAATAAATGTTGAGCGCCTCAGAAAGGCACAAAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243093 lncRNA upstream 209 27523186 ~ 27524109 (+) True G179370
TU243171 lncRNA upstream 30977 27492691 ~ 27493341 (+) True G179441
TU243163 lncRNA upstream 51597 27470120 ~ 27472721 (+) True G179433
TU243161 lncRNA upstream 54368 27469717 ~ 27469950 (+) True G179432
TU243156 lncRNA upstream 57959 27449402 ~ 27466359 (+) True G179428
TU243415 lncRNA downstream 857572 28382961 ~ 28384209 (+) True G179638
TU243375 lncRNA downstream 864376 28389765 ~ 28478787 (+) True G179599
TU243416 lncRNA downstream 963938 28489327 ~ 28489645 (+) True G179639
TU243513 lncRNA downstream 1087766 28613155 ~ 28613473 (+) True G179735
TU243523 lncRNA downstream 1103375 28628764 ~ 28628999 (+) True G179745
XM_022681353.1 mRNA upstream 13872 27496115 ~ 27510446 (+) True hyou1
XM_022681333.1 mRNA upstream 81087 26993596 ~ 27443231 (+) True LOC103046108
XM_022681334.1 mRNA upstream 81087 26993596 ~ 27443231 (+) False LOC103046108
XM_022681339.1 mRNA upstream 81087 26993596 ~ 27443231 (+) False LOC103046108
XM_022681337.1 mRNA upstream 81087 26993596 ~ 27443231 (+) False LOC103046108
XM_007258122.2 mRNA downstream 28813 27554202 ~ 27560568 (+) True crtam
XM_007258124.3 mRNA downstream 36474 27561863 ~ 27566576 (+) True LOC103043364
XM_022681359.1 mRNA downstream 42339 27567728 ~ 27590235 (+) False c20h11orf63
XM_022681356.1 mRNA downstream 42425 27567814 ~ 27623665 (+) False c20h11orf63
XM_007258118.3 mRNA downstream 42425 27567814 ~ 27590235 (+) True c20h11orf63
TU243054 other upstream 607974 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 3022373 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 3069696 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3816469 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 4559329 22963447 ~ 22964989 (+) True G178485
TU244158 other downstream 3613955 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 3907809 31433198 ~ 31433909 (+) True G180266
TU244438 other downstream 4746680 32272069 ~ 32273798 (+) False G180460
TU245165 other downstream 6647570 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 8290646 35816035 ~ 35836197 (+) False LOC103024766

Expression Profile