RNA id: TU243113


Basic Information

Item Value
RNA id TU243113
length 216
lncRNA type intronic
GC content 0.45
exon number 1
gene id G179390
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27054949 ~ 27055164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaacaaacagtgaATGAGTAAAGTTACAGCCAATCATGCACAGCATAGTCTCCACCGGAAACAACCTTCCACATGACTGCATCAGGCTCTGAGGAGCTGACCAACCGCCCAGACACAGGGAAAACATGGAAACTctacccagatagggacttgaacccaagaccccagcatTGGGATGCGAACATGATAACCACAAAATCCAAAAAACTTTTat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243038 lncRNA upstream 165850 26884416 ~ 26889099 (+) False G179345
TU243042 lncRNA upstream 165850 26884416 ~ 26889099 (+) False G179345
TU243043 lncRNA upstream 165850 26884416 ~ 26889099 (+) False G179345
TU243044 lncRNA upstream 165850 26884416 ~ 26889099 (+) False G179345
TU243037 lncRNA upstream 168610 26884416 ~ 26886339 (+) True G179345
TU243126 lncRNA downstream 51139 27106303 ~ 27106693 (+) True G179399
TU243131 lncRNA downstream 95950 27151114 ~ 27240082 (+) True G179404
TU243143 lncRNA downstream 166738 27221902 ~ 27232612 (+) True G179416
TU243094 lncRNA downstream 389613 27444777 ~ 27447272 (+) True G179371
TU243154 lncRNA downstream 392231 27447395 ~ 27448989 (+) True G179427
XM_007236222.3 mRNA upstream 66601 26983250 ~ 26988348 (+) True crebzf
XM_022681332.1 mRNA upstream 82548 26941351 ~ 26972401 (+) False sytl2
XM_007236217.3 mRNA upstream 82548 26941352 ~ 26972401 (+) False sytl2
XM_007236218.3 mRNA upstream 82548 26941354 ~ 26972401 (+) False sytl2
XM_007236219.3 mRNA upstream 82548 26941356 ~ 26972401 (+) False sytl2
XM_022681347.1 mRNA downstream 1017 27056181 ~ 27443231 (+) False LOC103046108
XM_022681346.1 mRNA downstream 44595 27099759 ~ 27443231 (+) False LOC103046108
XM_022681348.1 mRNA downstream 64130 27119294 ~ 27443231 (+) False LOC103046108
XM_022681350.1 mRNA downstream 171148 27226312 ~ 27443231 (+) False LOC103046108
XM_022681349.1 mRNA downstream 233272 27288436 ~ 27443231 (+) False LOC103046108
TU243054 other upstream 138605 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 2553004 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 2600327 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3347100 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 4089960 22963447 ~ 22964989 (+) True G178485
TU243090 other downstream 469154 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 469154 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 4084180 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 4378034 31433198 ~ 31433909 (+) True G180266
TU244438 other downstream 5216905 32272069 ~ 32273798 (+) False G180460

Expression Profile