RNA id: XM_007243426.3


Basic Information

Item Value
RNA id XM_007243426.3
length 1005
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC103038646
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27523131 ~ 27524135 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCACAGCGAATAAATGAGCAAACAGCTGAGCCTGAGAGATTTggactgactggctgactgaaaCAAATCACACAAGATGCCCGAGCCAGCGAAATCCGCCCCTGCCCCCAAAAAGGGCTCGAAAAAGGCAGTGACCAAGACGCAGAAGAAAGGGGATAAGAAAAGGCGCAAGACCAGGAAAGAAAGTTACGCCATTTATGTGTACAAAGTGTTGAAACAGGTCCACCCGGACACGGGCATCTCCTCTAAGGCAATGGGCATTATGAATTCGTTTGTGAATGACATCTTCGAGCGCATTGCTGGAGAAGCCTCTCGCCTTGCCCACTACAACAAGCGCTCCACCATCACCTCCCGAGAGATTCAGACGGCTGTGCGCCTGCTTTTGCCGGGAGAGCTCGCCAAGCACGCCGTTTCGGAAGGCACCAAGGCTGTGACGAAGTACACGAGCTCCAAGTGAATGAAAGGGCGAGCACGAGACATGATGGATGAACGTGGACGGAAGAGCTCTGCCACTGTTTCTGTGGAGGGAGGAGACTGACGGGGGGTGATCTACTGGTGGTGGTGGCTCGGTATCGCATGTtgggcaaaagaaaaaaaaacattctgaagGAGCATTCTGGACAATACTGTATCTCAGTAACTCGCCTCTTGTTTTCttgatttttctgtttgttttgtatttttaagccTTGGGAATTGCTTTGATGCTTTCCTCTCCAATTTTATGGCCAAATCTCTGTTGAATGTTCCTGTCTTAATTCAGAACTCATGTCTTTTTTTGCATGTGTGATGATCATGACCATGTAATTGCAGATGTGGTGCGTAACCCCCAGGTTCTGGGGTCTGTGCCTGGGGGcgtaaaataacattaatacccaAAAGCCTCAGAAAACATGTGAAATAATTGCTTTGTtgtgcaaataaaaacaaatccatGTCACATTCATGAACACAAAAATCTTGtccaattaaagaaataaacatgttGCTACATATTAACACCA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243329 lncRNA downstream 15154 27505695 ~ 27507977 (-) True G179572
TU243280 lncRNA downstream 507165 27015745 ~ 27015966 (-) True G179528
TU243276 lncRNA downstream 512313 27010524 ~ 27010818 (-) True G179524
TU243233 lncRNA downstream 634046 26885487 ~ 26889085 (-) True G179490
TU243232 lncRNA downstream 637254 26884446 ~ 26885877 (-) False G179490
TU243342 lncRNA upstream 37710 27561845 ~ 27566692 (-) False G179578
TU243371 lncRNA upstream 138852 27662987 ~ 27663294 (-) True G179596
TU243372 lncRNA upstream 142624 27666759 ~ 27667611 (-) True G179597
TU243419 lncRNA upstream 163991 27688126 ~ 27691388 (-) True G179642
TU243429 lncRNA upstream 388695 27912830 ~ 27964374 (-) True G179651
XM_022681354.1 mRNA downstream 4569 27511131 ~ 27518562 (-) True LOC103027279
XM_007258127.3 mRNA downstream 29765 27480659 ~ 27493366 (-) True vps11
XM_007258128.3 mRNA downstream 45171 27470086 ~ 27477960 (-) True ift46
XM_022681352.1 mRNA downstream 56457 27447351 ~ 27466674 (-) False LOC103044875
XM_015608082.2 mRNA downstream 71460 27447351 ~ 27451671 (-) True LOC103044875
XM_022681355.1 mRNA upstream 4525 27528660 ~ 27539710 (-) False zpr1
XM_007258125.3 mRNA upstream 4525 27528660 ~ 27539710 (-) True zpr1
XM_007258116.3 mRNA upstream 67436 27591571 ~ 27594524 (-) True bsx
XM_007258115.3 mRNA upstream 75957 27600092 ~ 27606283 (-) True LOC103041089
XM_022680725.1 mRNA upstream 886877 28411012 ~ 28570105 (-) True LOC103039144
TU243317 other downstream 45153 27473355 ~ 27477978 (-) False ift46
XR_002651480.1 other downstream 58268 27464039 ~ 27464863 (-) True LOC103045184
TU243326 other downstream 79815 27440231 ~ 27443316 (-) True G179569
TU242660 other downstream 2315778 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 2388975 25130982 ~ 25134156 (-) True G178982
TU243357 other upstream 193 27524328 ~ 27525388 (-) True G179583
TU243338 other upstream 38839 27562974 ~ 27566692 (-) True G179578
TU243339 other upstream 38839 27562974 ~ 27566692 (-) False G179578
TU243597 other upstream 1326555 28850690 ~ 28851105 (-) True G179816
TU244105 other upstream 3422811 30946946 ~ 30957767 (-) False G180188

Expression Profile