RNA id: TU243372


Basic Information

Item Value
RNA id TU243372
length 853
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G179597
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27666759 ~ 27667611 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccagtgttgggagtaacggcgttaaaataaacggcgttactaacgccgttacttttttcagtaacgagtaatctaactaattactctgactgtaactataacgccgttaccattttcgacactccgttactgcacgttactttagcagctgaatgaacttttttttaactttgcgcatacagacaaagagccctatcatacacccaggggtgtagcagcaaatgctgggccctgtacactctcaatgtcagtgggcccctatccatgccagtataCAAGGAAggtgagcgaaaaaaaaaaatctggattttcatgggcccttctccctactcgggccctgggtagtcaggtccacttttccccccactaccacaccCATGCATACACCCCGcacaaggcgtgtagcgtggcgctttgccacccgtcaacagtctatttttaggccttgcacgcttccttaaaatagcgttggactttggaatatattaacaccgatgggcgtggtggtctggaaatgatgtgtgttgaggtaaatttctggcgtgtttttatcttggcggcggaaaaaagcttAGCGCGATTGCtcaccctgcgctccaaaatactccataccatcacatctttaccacataaaaataaaccacacccagagccttcagcaatcaactatgaaaaaatatatatacttaaaaatctgcactgtaactcataaattattattagttatatttatttctgtcagttataaggatttatatttatgtttagtacacagactaaataactgtaactaggcattctgctgtttaaaaatttcaacagatgcttattctcactcaaatgctggagtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243371 lncRNA downstream 3465 27662987 ~ 27663294 (-) True G179596
TU243342 lncRNA downstream 100067 27561845 ~ 27566692 (-) False G179578
TU243329 lncRNA downstream 158782 27505695 ~ 27507977 (-) True G179572
TU243280 lncRNA downstream 650793 27015745 ~ 27015966 (-) True G179528
TU243276 lncRNA downstream 655941 27010524 ~ 27010818 (-) True G179524
TU243419 lncRNA upstream 20515 27688126 ~ 27691388 (-) True G179642
TU243429 lncRNA upstream 245219 27912830 ~ 27964374 (-) True G179651
TU243447 lncRNA upstream 720361 28387972 ~ 28389380 (-) True G179669
TU243449 lncRNA upstream 726173 28393784 ~ 28394014 (-) True G179671
TU243472 lncRNA upstream 853424 28521035 ~ 28521289 (-) True G179694
XM_007258115.3 mRNA downstream 60476 27600092 ~ 27606283 (-) True LOC103041089
XM_007258116.3 mRNA downstream 72235 27591571 ~ 27594524 (-) True bsx
XM_022681355.1 mRNA downstream 127049 27528660 ~ 27539710 (-) False zpr1
XM_007258125.3 mRNA downstream 127049 27528660 ~ 27539710 (-) True zpr1
XM_007243426.3 mRNA downstream 142624 27523131 ~ 27524135 (-) True LOC103038646
XM_022680725.1 mRNA upstream 743401 28411012 ~ 28570105 (-) True LOC103039144
XM_022681361.1 mRNA upstream 1271980 28939591 ~ 28949916 (-) True panx3
XM_022681362.1 mRNA upstream 1286428 28954039 ~ 28998439 (-) False pknox2
XM_022681363.1 mRNA upstream 1286428 28954039 ~ 28991641 (-) True pknox2
XM_022681364.1 mRNA upstream 1491429 29159040 ~ 29364276 (-) False robo3
TU243338 other downstream 100067 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 100067 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 141371 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 142650 27523134 ~ 27524109 (-) False LOC103038646
TU243317 other downstream 188781 27473355 ~ 27477978 (-) False ift46
TU243597 other upstream 1183079 28850690 ~ 28851105 (-) True G179816
TU244105 other upstream 3279335 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 4254684 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 4572568 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 5509152 33176763 ~ 33177497 (-) True LOC111195091

Expression Profile