RNA id: TU243871


Basic Information

Item Value
RNA id TU243871
length 376
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G180015
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30074016 ~ 30074391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctttcgcatcactctcccatacagcttctcctgttgcaaagtgcgctgtattgttgaccgatgcacagtgacaccatctgcagcaagatgatgctgcagctctttggaggtggtctgtggattgtccttgactgttctcaccattcttcttctctgcctttctgatatttttcttggcctgccacttctgggcttaacaagaactgtccctgtgctcttccatttccttactatgtttctcacagtggaaactgacaggttaaatctctgagacaactttttgtatccttcccctgaacaactatgttgaacaatctttgtttttagatcatttgagagttgttttgatgagcccatgatgccactcttcagag

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243870 lncRNA downstream 1608 30072175 ~ 30072408 (-) True G180014
TU243867 lncRNA downstream 114859 29956229 ~ 29959157 (-) True G180011
TU243860 lncRNA downstream 163701 29910056 ~ 29910315 (-) True G180007
TU243853 lncRNA downstream 168998 29903816 ~ 29905018 (-) True G180002
XR_002651403.1 lncRNA downstream 169857 29886462 ~ 29904159 (-) True LOC111194987
TU243879 lncRNA upstream 52800 30127191 ~ 30127665 (-) True G180023
TU243914 lncRNA upstream 144857 30219248 ~ 30268710 (-) True G180047
TU243911 lncRNA upstream 198216 30272607 ~ 30273408 (-) True G180044
TU243913 lncRNA upstream 200348 30274739 ~ 30275718 (-) True G180046
TU243912 lncRNA upstream 202476 30276867 ~ 30278610 (-) True G180045
XM_022681370.1 mRNA downstream 445617 29572654 ~ 29628399 (-) False picalm
XM_022681376.1 mRNA downstream 445618 29572654 ~ 29628398 (-) False picalm
XM_022681369.1 mRNA downstream 445618 29572654 ~ 29628398 (-) True picalm
XM_022681374.1 mRNA downstream 445624 29572654 ~ 29628392 (-) False picalm
XM_022681372.1 mRNA downstream 445624 29572654 ~ 29628392 (-) False picalm
XM_022681396.1 mRNA upstream 204705 30279096 ~ 30419086 (-) True cblb
XM_022681405.1 mRNA upstream 603380 30677771 ~ 30733688 (-) True crybg3
XM_007247290.3 mRNA upstream 727128 30801519 ~ 30848802 (-) False hlcs
XM_022681408.1 mRNA upstream 727128 30801519 ~ 30848802 (-) False hlcs
XM_007247289.3 mRNA upstream 727128 30801519 ~ 30848802 (-) True hlcs
TU243597 other downstream 1222911 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 2507324 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 2507324 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 2548628 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 2549907 27523134 ~ 27524109 (-) False LOC103038646
TU244105 other upstream 872555 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 1847904 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 2165788 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 3102372 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 5358841 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile