RNA id: TU243945


Basic Information

Item Value
RNA id TU243945
length 560
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G180077
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30476450 ~ 30477009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCCAGCAGAGCTCAGAAGAGAAGCAGCCATGCTGGTTCTAGCTCGGAAGGCACAGATGAGTGAATCCCACCTCCTCCACAAGACCGTCACAAAGTCTTCACAGCGCATGCGCCTCAAGTCCTGACGCCCCTTTGCCACACATGCCCAGGAACTGCTCTGCACAACACCAGTTGACATCTCCAAGGCCTCCTGGGTGAGGGCAAGATGGAAGGACCAGTGGAAGGCAGCAGGACCATCTACACTGCATCAGTTTATCAAAGATCCGACGGATGTACCTGGCCAGCATCTTACCCGTAGGGAGTGGACAACCCTAAACCGCCTGAGAACAGGAGTAGGGCGCTTTGGTGCAGTGATGCAGAGGTGGGGTCTTACAGACAGTGCCCACTGCGAATGTGGGGACCCATCACAAACTCTGGAACACGTGATGACTACCTGCCCCAAATTCCGGCCACCAAATGGCACTCAAGGTCTAATAGACCTGGACAACGAAACACTGGACTGGCTTGCAGCAACAGAACTGAGGGTCTAAGGACAtacgccagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243923 lncRNA downstream 161807 30313315 ~ 30314643 (-) True G180056
TU243912 lncRNA downstream 197840 30276867 ~ 30278610 (-) True G180045
TU243913 lncRNA downstream 200732 30274739 ~ 30275718 (-) True G180046
TU243911 lncRNA downstream 203042 30272607 ~ 30273408 (-) True G180044
TU243914 lncRNA downstream 207740 30219248 ~ 30268710 (-) True G180047
TU243956 lncRNA upstream 64815 30541824 ~ 30548024 (-) True G180086
TU243962 lncRNA upstream 86813 30563822 ~ 30564340 (-) True G180092
TU243963 lncRNA upstream 86813 30563822 ~ 30564737 (-) False G180092
TU244011 lncRNA upstream 100296 30577305 ~ 30578205 (-) True G180122
TU244115 lncRNA upstream 413659 30890668 ~ 30907924 (-) True G180196
XM_022681396.1 mRNA downstream 57364 30279096 ~ 30419086 (-) True cblb
XM_022681370.1 mRNA downstream 848051 29572654 ~ 29628399 (-) False picalm
XM_022681376.1 mRNA downstream 848052 29572654 ~ 29628398 (-) False picalm
XM_022681369.1 mRNA downstream 848052 29572654 ~ 29628398 (-) True picalm
XM_022681374.1 mRNA downstream 848058 29572654 ~ 29628392 (-) False picalm
XM_022681405.1 mRNA upstream 200762 30677771 ~ 30733688 (-) True crybg3
XM_007247290.3 mRNA upstream 324510 30801519 ~ 30848802 (-) False hlcs
XM_022681408.1 mRNA upstream 324510 30801519 ~ 30848802 (-) False hlcs
XM_007247289.3 mRNA upstream 324510 30801519 ~ 30848802 (-) True hlcs
XM_022681414.1 mRNA upstream 380748 30857757 ~ 30875590 (-) True pigp
TU243597 other downstream 1625345 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 2909758 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 2909758 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 2951062 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 2952341 27523134 ~ 27524109 (-) False LOC103038646
TU244105 other upstream 469937 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 1445286 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 1763170 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 2699754 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4956223 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile