RNA id: TU244118


Basic Information

Item Value
RNA id TU244118
length 1130
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G180197
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30911450 ~ 30919603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTATTGCACAGAACTGATTCAGCGCGGTTTGATACTCCTCATTCTTATCCTGGATTTGCTTAGTGTAACTCTCCTGCAAATCTAACAACTCTTTGATCTCCCCCTTCAAGGTTTTAAGGGTCTCttggttgtgttttttctcctgctGATCTTTTCGGATCTCCTCCTCAAGCTTTTGTTGGAATAAGCTGAGCTCTTTGTTTGTAATCTCTATTTTCTGTTGGGCTTCCTTCACTTGGGCCTCCAGTACAGAAAGTTCTTCCTTTCTTGTTATCTGGCGAGACGAACGTGTGTCCTTCGCATTTTGGATGCACTTTTCaagttttatgttgtttttctctttcaggATCATATCACCctTATTCCTTTCCAACAACGCACACGGTTCTGTATTAACGGCCACATCATCTTTGGTGTCTTTGTTATAACCAAACGTCTGCacagaaattgttttattttcagattttttagctTCGTTACGAATAATCTCTGAACATGGCTGTCCTCCTCCTTTCTCACTGCATGCATTAATACTGTTCATTTCAGGGGGGTAGGCAGAGTTATAGAAGTTCAGTTCTGAGCCATGGACGTACCCCGAACACTCCGGAACTGTTAAACCAGATGAAAAAGCAGCGAACATGCTTGTATCTTCTGGTACAAACATGCAATCACCATTACGAGCCTGCTGAGATTCCAAAACATATGGATCAGGCAGCGTGGGTTCACACAGTCCTGATGCAGAGCTGTCTTCATCACTCAAAATACCGGGAATGTCACAAGACGCGTTACGGCCACTGAAATGCTCATACTGTGGAAGAAACTCTCTTGCTGTGGGATCGAGATAGTAGGATCCTCTAAACTCCAAAGTCTCAGTGCCGAAAGCATGAGGAACACAGTCAGGGAAAGCACTGGCATCGTCAGCCATACTGTTCTGCAGGGTGACCGCATGCCTAGTCAGTCCGATACGGTTTTCATTCATCACAAACCGAAGAGACTCGAGTAGAAAAGCTTCAAGTCCTCCAGCCCCCTCAATCTTCTGCTGAGCTTCAAGCGGAAAGTTCTCCAGTTCACCCACCAGCAGTGGGTTGGACACCTCCAGAGGACCATACTGCTCCAGAATCTGAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244115 lncRNA downstream 3526 30890668 ~ 30907924 (-) True G180196
TU244011 lncRNA downstream 333245 30577305 ~ 30578205 (-) True G180122
TU243963 lncRNA downstream 346713 30563822 ~ 30564737 (-) False G180092
TU243962 lncRNA downstream 347110 30563822 ~ 30564340 (-) True G180092
TU243956 lncRNA downstream 363426 30541824 ~ 30548024 (-) True G180086
TU244104 lncRNA upstream 32979 30946946 ~ 30950919 (-) True G180188
TU244139 lncRNA upstream 125049 31039016 ~ 31066380 (-) True G180217
TU244154 lncRNA upstream 184064 31098031 ~ 31098497 (-) True G180231
TU244222 lncRNA upstream 205145 31119112 ~ 31120476 (-) True G180285
TU244224 lncRNA upstream 238579 31152546 ~ 31152937 (-) True G180287
XM_022681414.1 mRNA downstream 35860 30857757 ~ 30875590 (-) True pigp
XM_007247290.3 mRNA downstream 62648 30801519 ~ 30848802 (-) False hlcs
XM_022681408.1 mRNA downstream 62648 30801519 ~ 30848802 (-) False hlcs
XM_007247289.3 mRNA downstream 62648 30801519 ~ 30848802 (-) True hlcs
XM_022681405.1 mRNA downstream 177762 30677771 ~ 30733688 (-) True crybg3
XM_022681415.1 mRNA upstream 12201 30926168 ~ 30932814 (-) True dscr3
XM_007247282.3 mRNA upstream 58513 30972480 ~ 31057287 (-) False kcnj6
XM_022681416.1 mRNA upstream 58513 30972480 ~ 31057287 (-) True kcnj6
XM_007247281.3 mRNA upstream 206809 31120776 ~ 31221257 (-) False erg
XM_015605342.2 mRNA upstream 206809 31120776 ~ 31221256 (-) True erg
TU243597 other downstream 2060345 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3344758 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3344758 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3386062 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 3387341 27523134 ~ 27524109 (-) False LOC103038646
TU244105 other upstream 32979 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 1008328 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 1326212 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 2262796 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4519265 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile