RNA id: TU244154


Basic Information

Item Value
RNA id TU244154
length 467
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G180231
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31098031 ~ 31098497 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGACAGTTCATCAGCACTGTTCACCAGACGTGGAGTTTCTCCTGCTTAAATGTCGTCCCCACTACCTTCCACGGGAATTTTCAGCTGTGTTTTTATGCTCTGTTTACATTCATCCACGAGCGAACTCCACAGCAGCGCTCGGTGCACTCCACGACGTCATCAGCGCGCTGGAGACGGCTCACCCTGATGCCGTCATCATCACAGCTGGTGATTTTAATCAGTGCAACCTACGGACTGTATTTCACAATTACTACCAACATGTGGATATTCCTACACGAGATAAAAACACGCTGGATCACGTGTACAGTAATTTGCGTGGTGCTTATCGTGCTGCACCACGCCCCCACTTTGGACAATCAGACCACATCTCCCTATTCCTGTACCCAGCATACAGGCAGAGACTGAAACAGACAACCCCCACAACCAGAACAGTGAAAATATGGACTCCGGAGACTGAGGGCatcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244139 lncRNA downstream 31651 31039016 ~ 31066380 (-) True G180217
TU244104 lncRNA downstream 147112 30946946 ~ 30950919 (-) True G180188
TU244117 lncRNA downstream 178428 30911450 ~ 30919603 (-) True G180197
TU244118 lncRNA downstream 184064 30911450 ~ 30913967 (-) False G180197
TU244115 lncRNA downstream 190107 30890668 ~ 30907924 (-) True G180196
TU244222 lncRNA upstream 20615 31119112 ~ 31120476 (-) True G180285
TU244224 lncRNA upstream 54049 31152546 ~ 31152937 (-) True G180287
TU244233 lncRNA upstream 199270 31297767 ~ 31306347 (-) True G180295
TU244248 lncRNA upstream 241062 31339559 ~ 31397022 (-) True G180309
TU244254 lncRNA upstream 323888 31422385 ~ 31423190 (-) True G180315
XM_007247282.3 mRNA downstream 40744 30972480 ~ 31057287 (-) False kcnj6
XM_022681416.1 mRNA downstream 40744 30972480 ~ 31057287 (-) True kcnj6
XM_022681415.1 mRNA downstream 165217 30926168 ~ 30932814 (-) True dscr3
XM_022681414.1 mRNA downstream 222441 30857757 ~ 30875590 (-) True pigp
XM_007247290.3 mRNA downstream 249229 30801519 ~ 30848802 (-) False hlcs
XM_007247281.3 mRNA upstream 22279 31120776 ~ 31221257 (-) False erg
XM_015605342.2 mRNA upstream 22279 31120776 ~ 31221256 (-) True erg
XM_022681417.1 mRNA upstream 22279 31120776 ~ 31199961 (-) False erg
XM_022681418.1 mRNA upstream 22279 31120776 ~ 31192126 (-) False erg
XM_007247280.3 mRNA upstream 22279 31120776 ~ 31166119 (-) False erg
TU244105 other downstream 140264 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2246926 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3531339 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3531339 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3572643 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 823798 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 1141682 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 2078266 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4334735 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile