RNA id: TU244193


Basic Information

Item Value
RNA id TU244193
length 712
RNA type TUCP
GC content 0.55
exon number 1
gene id G180266
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31433198 ~ 31433909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccaggtccagtaTAGTGGATATTTTAGTATACTCAACTTTTTACTCAACTTTCATACTCAAAAACAagttagtattagtaattaaCACTCACTTGGgatttagtttgtttatgttactttttagtgtgtatgtttttttattgtgtgttagCTGTTACTAACCTGAGCGCTGCTGCTActggtggtgctgctgctgctggccgCTTTGTCCGAACCCACTGGGTGGTGGGCCTGCAGCGGTGGGGGCTGGGacagttgtgtgtgtatgttagggCGGTTGTGTGAGCTGGGAGCTTGCTGTAGTTTGGgcagctgtggagtgtgtgggggttTGGTGGGGAGTGTGTGCAGGGCAGGCTgggctgctgctgatgcagaggAGGCAGAGGAAGAGGGTGATTGGGAGATGGAGGGTTTAACGGAGGCTGCTGGAGGAGGACAGGGTCTGGGGGTGGTCTGTTCTGGTCTCTTGGGGGCCGGAACCGCTTCAGCTGGTCCTGGGGCAGCTTTGGTGGGCATGGGTGGGGTAGCAGTGGGTTTGGTGAGGGTGTGAGGTGGCGTGCGGTGCTGCTGGAGGGGGGGAGGTGGGGGCTGAGCTGATCTGTAGAAAAGTCCAGTCTGTGGATCCAGTGTGTCACCATCCAACTCGCCCTCCTCCACTACAGTCTGCTCCTCCAGAGGCCTGCCCTGCGCAGGAGAAGCGACAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244191 lncRNA upstream 7087 31423612 ~ 31426111 (+) True G180264
TU244190 lncRNA upstream 9990 31422470 ~ 31423208 (+) True G180263
TU244187 lncRNA upstream 37850 31394986 ~ 31395348 (+) True G180260
TU244162 lncRNA upstream 202561 31210212 ~ 31230637 (+) True G180237
TU244156 lncRNA upstream 312888 31119113 ~ 31120310 (+) True G180233
TU244206 lncRNA downstream 17395 31451304 ~ 31456528 (+) True G180278
TU244212 lncRNA downstream 29396 31463305 ~ 31464839 (+) True G180280
TU244307 lncRNA downstream 308802 31742711 ~ 31742990 (+) True G180350
TU244357 lncRNA downstream 447498 31881407 ~ 31881704 (+) True G180399
TU244359 lncRNA downstream 458925 31892834 ~ 31895035 (+) True G180401
XM_022681421.1 mRNA upstream 72930 31349241 ~ 31360268 (+) False LOC103032011
XM_022681423.1 mRNA upstream 72930 31349293 ~ 31360268 (+) False LOC103032011
XM_022681422.1 mRNA upstream 72930 31350007 ~ 31360268 (+) True LOC103032011
XM_007247276.3 mRNA upstream 118759 31295065 ~ 31314439 (+) True mpzl1
XM_007247277.3 mRNA upstream 188314 31237788 ~ 31244884 (+) True ets2
XM_022681425.1 mRNA downstream 639718 32073627 ~ 32086443 (+) True LOC103030242
XM_007247261.3 mRNA downstream 678447 32112356 ~ 32187729 (+) True LOC103040533
XM_007247262.3 mRNA downstream 756939 32190848 ~ 32205776 (+) True LOC103040837
XM_022681426.1 mRNA downstream 847370 32281279 ~ 32298945 (+) True map3k7cl
XM_007247257.3 mRNA downstream 872548 32306457 ~ 32322948 (+) False bach1
TU244158 other upstream 282103 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 3907757 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 3907809 27524318 ~ 27525389 (+) False LOC103038954
TU243054 other upstream 4516854 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 6931253 24501874 ~ 24501945 (+) True trnam-cau_40
TU244438 other downstream 838160 32272069 ~ 32273798 (+) False G180460
TU245165 other downstream 2739050 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 4382126 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 4382130 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 4396772 35830681 ~ 35842871 (+) True LOC103024766

Expression Profile