RNA id: TU244323


Basic Information

Item Value
RNA id TU244323
length 1293
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G180366
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31758098 ~ 31759438 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAATAAGACTGAAAATGTCATACGTTGAAACAGACGATGTGTCAGAGAGTGAGGTGGTGCTAGTGTTATATTGGGGGTTATGCAGAATCTGTCAAAAGCGTATTGAGGCTGGATAAAGCACAACTTTTTAATCTCATCCTCTTGAGGATTCAGCCAAGATCAATTTTGCCCTTTGAAGGCCACAAGAGACAGTGTTAGGAGGCTCATCTCATCCACTCTGTGTTTGCCTCTTATCATTCCCACATTAAATGTCATTTATGACTTTGGGGCACTTGTTATTtctcagaagaagaagaaacaaaagACGGGAATGTGCATGACAGTATTCTGTAATCTTTTACTTCTTTAACAAATGTTTTGTGACAAAAGAAGCCACAGGCGAGAAGATATGAAGAAGTGAAAGGTCGCTGACGCTGAAGacgtgggtggggtgggatgcGGTGTTTTGGGAGGGGTGCTTGAGGTGTTTTCTTTTGCCACTATTAAGTAAAGGAAAATCAGATTGAATGTATTTAAGatacactcattgacaaaaaaaactaatgataAAAATGAATGCACCAAGAAGGATTTGTTGAATGAAACGTTGGTTAAATTTGTGATTGTAATGACGATGATAATATGTGTgagtgattacaatattagatCCAAAGTGTATTTGTTgaaactgtactgtaattaAAAGGTGGCTATAGTACACTGTTTGACTTACAGAATGAAATATGTCTGACATACAGCCCAGCTAACATTATGACGTTAGAAGACCGTTACGCAAATTTTTGCAACGTTACAGAAATCATGTTTCAGGAAGGTTCTAAAGGAAAATGTGACATACTAATGGTTTGCAGCACAAAACCACGTTATTTCAACGTTTCTCAGGTAACATTCTATGCTAGATGAATaataacattatggaaacataacatttttggtaacactttacttggatggtccattttatggccttgttgatgctcaaatgacattcaactaacattgaattgaatgtccattaaattgaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccgtacacctaaccctaaacttaacccttaatcaaccataaaatcgaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaacctaagcttaaaatctaaccctaaacccaatcctaaaatattaagataagcgtttgggttagagttgaatgtagggttatattcaatagagaatcatttactttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244331 lncRNA downstream 15108 31742731 ~ 31742990 (-) True G180373
TU244300 lncRNA downstream 121550 31636347 ~ 31636548 (-) True G180344
TU244298 lncRNA downstream 176161 31581704 ~ 31581937 (-) True G180342
TU244294 lncRNA downstream 193230 31564597 ~ 31564868 (-) True G180338
TU244254 lncRNA downstream 334908 31422385 ~ 31423190 (-) True G180315
TU244424 lncRNA upstream 317926 32077364 ~ 32079824 (-) True G180454
TU244533 lncRNA upstream 445683 32205121 ~ 32208569 (-) True G180543
TU244530 lncRNA upstream 504136 32263574 ~ 32264739 (-) True G180540
TU244553 lncRNA upstream 562663 32322101 ~ 32326822 (-) True G180562
TU244564 lncRNA upstream 676887 32436325 ~ 32445752 (-) False tiam1
XM_007247265.3 mRNA downstream 216623 31519076 ~ 31541475 (-) True LOC103041957
XM_022681424.1 mRNA downstream 248877 31499084 ~ 31509221 (-) True LOC111195087
XM_007247269.3 mRNA downstream 261380 31493584 ~ 31496718 (-) True timm10b
XM_007247268.3 mRNA downstream 267737 31466629 ~ 31490361 (-) True ilk
XM_007247270.3 mRNA downstream 293306 31458438 ~ 31464792 (-) True nhlrc3
XM_015605316.2 mRNA upstream 2463 31761901 ~ 31847969 (-) True LOC103030874
XM_022680726.1 mRNA upstream 134764 31894202 ~ 32071924 (-) True LOC103030555
XM_007247264.3 mRNA upstream 331251 32090689 ~ 32096800 (-) True LOC103041448
XM_007247263.3 mRNA upstream 340763 32100201 ~ 32106911 (-) True LOC103041136
XM_022680727.1 mRNA upstream 485569 32245007 ~ 32262598 (-) True tmem135
TU244105 other downstream 800331 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2906993 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 4191406 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 4191406 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 4232710 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 162857 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 480741 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1417325 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3673794 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile