RNA id: TU244357


Basic Information

Item Value
RNA id TU244357
length 298
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G180399
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31881407 ~ 31881704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caataaccacaccttttttgaatagagctgaataacgttttaaaaaacaaattctgtggggatataaaaatgtgacgatataagcagaggttacactagctgttgcatttaaataatggaggtagaattacagtatattggaaaaaaacgtgattgaaagttgttctgttttgccattgaaacctatgggggtgggtggggttacacagctttctgaaaccgaacagcagggggcgcccgacctgtggtggcttcacttttgagagacgatgctctgtccagctatacacagtctatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244307 lncRNA upstream 138417 31742711 ~ 31742990 (+) True G180350
TU244212 lncRNA upstream 416568 31463305 ~ 31464839 (+) True G180280
TU244206 lncRNA upstream 424879 31451304 ~ 31456528 (+) True G180278
TU244191 lncRNA upstream 455296 31423612 ~ 31426111 (+) True G180264
TU244190 lncRNA upstream 458199 31422470 ~ 31423208 (+) True G180263
TU244359 lncRNA downstream 11130 31892834 ~ 31895035 (+) True G180401
TU244360 lncRNA downstream 32163 31913867 ~ 31914649 (+) True G180402
TU244361 lncRNA downstream 37571 31919275 ~ 31919689 (+) True G180403
TU244388 lncRNA downstream 159941 32041645 ~ 32096809 (+) True G180426
TU244441 lncRNA downstream 231340 32113044 ~ 32208555 (+) True G180463
XM_022681421.1 mRNA upstream 521139 31349241 ~ 31360268 (+) False LOC103032011
XM_022681423.1 mRNA upstream 521139 31349293 ~ 31360268 (+) False LOC103032011
XM_022681422.1 mRNA upstream 521139 31350007 ~ 31360268 (+) True LOC103032011
XM_007247276.3 mRNA upstream 566968 31295065 ~ 31314439 (+) True mpzl1
XM_007247277.3 mRNA upstream 636523 31237788 ~ 31244884 (+) True ets2
XM_022681425.1 mRNA downstream 191923 32073627 ~ 32086443 (+) True LOC103030242
XM_007247261.3 mRNA downstream 230652 32112356 ~ 32187729 (+) True LOC103040533
XM_007247262.3 mRNA downstream 309144 32190848 ~ 32205776 (+) True LOC103040837
XM_022681426.1 mRNA downstream 399575 32281279 ~ 32298945 (+) True map3k7cl
XM_007247257.3 mRNA downstream 424753 32306457 ~ 32322948 (+) False bach1
TU244193 other upstream 447498 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 730312 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 4355966 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 4356018 27524318 ~ 27525389 (+) False LOC103038954
TU243054 other upstream 4965063 26913886 ~ 26916344 (+) False rnasek
TU244438 other downstream 390365 32272069 ~ 32273798 (+) False G180460
TU245165 other downstream 2291255 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 3934331 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 3934335 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 3948977 35830681 ~ 35842871 (+) True LOC103024766

Expression Profile