RNA id: TU244438


Basic Information

Item Value
RNA id TU244438
length 1304
RNA type TUCP
GC content 0.39
exon number 4
gene id G180460
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32264998 ~ 32273798 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taattaataataaaatgtgtgtcagatcctgagagctctattgtgtaggcttaaattactgaattaactctcaGCTGATATACATAGCTCAAAACAGATTTTCTTCATCAAAAACGAAAACacagatttgtagaccaaatttctatgacttttccaaaccttcctgggtatttttattttttcaaaacttctccaggcctggaaattgctattttcatattttatgacttttccaaGTTTTTCCATGACCGCACAACACCTGATAATCAGTTGCTCAAAATTCTGATGGAAATTACATACTTAATGCACTCTACGCCAATTTGGTATACTACATTACGTTTGCACATTCTTTGCAACACCCccaaaaattataatttaaattaaacaaagctTTTGCCaatttgcattttcatttaattcataAATTCCACTGTGCAGGCTCACGTTTCAGCTTGTTAATATTTTTCACAAGCTCTAAACAGAACCATGTAGGATGCCGCCAAACAAGTTGCCTAAAATGACCAAATAATTCATATTCTCTGCATTaggactaataaataaataataaaccaagCATTTAATGTGTTAATCTTTACtgtatacagtaaaaatgcattGATATTAGCCACAGAAAAATGGgaatatttttaattgcaaaACACTTCTAGCAACAAACTTGATTTACACACAATATGCTCACCTTGGTCTCAGTAACCATGCAGTCAAAAGGACAGGAGAATACAGCTATCTTGGTATCTTTAACTGCTGTGATGTCTCCTTCAACCTCCTTCTTGAAAACCATTCCATGGAGCATCGAAGAGGCATTCAGTCCACATCCCAAGATCTTACACACTCTGACATTATCAACATTGAAACTGCCAGACTCAGGAAAAATGGAGACACAGGCTTGTGCGATGAGATCGGCAAGGAAGTCCTCGTTGCCATACTGTTTGCTCATCACAGCAGTACGAATCATTGCGGTGGCCTCAGCCAAGTCATGCAGGTTTTTGGCAGATGAGCAGACCAGGTCTGGCAGAATGTCCAGGGCCTTTTTGCAGGCCATCTCATAGCCCTCAATGACCTGAAACAGAGAGACCCATTCTCAGAAGCTCCTCTGCCAGTTCAAGCAGAGCGCCAGCGAACACCAGGACAAAGTTGGTTCCATCTCCCACCTCCTGCTCCTGCATGTGGGATGCCATCACAATCATCTTAGCAGCTGGATGCTGGACCTGTTAAGGAAAACACAGGTTTGTCATCACCACATTTAGGGATTTTTTTACACCTAAGAGCAAGGTCACTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244434 lncRNA upstream 366 32264998 ~ 32271703 (+) True G180460
TU244450 lncRNA upstream 58162 32213356 ~ 32213907 (+) True G180472
TU244441 lncRNA upstream 63514 32113044 ~ 32208555 (+) True G180463
TU244388 lncRNA upstream 175260 32041645 ~ 32096809 (+) True G180426
TU244361 lncRNA upstream 352380 31919275 ~ 31919689 (+) True G180403
TU244470 lncRNA downstream 34731 32308529 ~ 32309577 (+) True G180488
TU244473 lncRNA downstream 55383 32329181 ~ 32330732 (+) True G180490
TU244490 lncRNA downstream 162572 32436370 ~ 32445624 (+) True G180504
TU244497 lncRNA downstream 177234 32451032 ~ 32488971 (+) True G180510
TU244509 lncRNA downstream 328961 32602759 ~ 32603043 (+) True G180521
XM_007247262.3 mRNA upstream 66293 32190848 ~ 32205776 (+) True LOC103040837
XM_007247261.3 mRNA upstream 84340 32112356 ~ 32187729 (+) True LOC103040533
XM_022681425.1 mRNA upstream 185626 32073627 ~ 32086443 (+) True LOC103030242
XM_022681421.1 mRNA upstream 911801 31349241 ~ 31360268 (+) False LOC103032011
XM_022681423.1 mRNA upstream 911801 31349293 ~ 31360268 (+) False LOC103032011
XM_022681426.1 mRNA downstream 7481 32281279 ~ 32298945 (+) True map3k7cl
XM_007247257.3 mRNA downstream 32659 32306457 ~ 32322948 (+) False bach1
XM_015605341.2 mRNA downstream 32659 32306457 ~ 32322948 (+) False bach1
XM_007247256.3 mRNA downstream 36771 32310569 ~ 32322948 (+) True bach1
XM_022681432.1 mRNA downstream 369714 32643512 ~ 32650332 (+) True LOC111195090
TU244193 other upstream 838160 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 1120974 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 4746628 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 4746680 27524318 ~ 27525389 (+) False LOC103038954
TU243054 other upstream 5355725 26913886 ~ 26916344 (+) False rnasek
TU245165 other downstream 1899161 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 3542237 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 3542241 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 3556883 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 3932769 36206567 ~ 36207895 (+) True G181734

Expression Profile