RNA id: TU244530


Basic Information

Item Value
RNA id TU244530
length 1166
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G180540
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32263574 ~ 32264739 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgagtgttctttaaagagctctgtctttaggagtttcttaaaggtagCGAGGGAtactcctgatctggtagtagaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagtttattTTACCATctgggaactctgtatgagaacagtctgattgctttgtgtgagtgttaggAAATGTAGGCagcgttcactggaggagcacAGCTGTCTTTGGATGATAAAAGACTTTAGGAACATTTCTAAATTAGGTCAATTGCTTCTAAGCAATTAGGAGAAATTCACCTACTGTATGTGTGACCCATTCTAGAGGGTGATTTTTAGGATAAGATTTGAGTCATCTGTCAACTAATCTTTTAAAACTATTGAAAGCATTAACAGAGATTGACATCACTGGGTGCAAGCTGTATGTATTAGATGTGAATGTTTTTTGCAGCTTCAAATTAGTTAAACAGAACATATTGTTCAGAATTTAGCTATTTTATGCAGTTGATTTTAGAACTGGTAGAAATTgataaaattcatttaaaattagAAAGTTCATTGTATAAATTCTATCTAAAATGTACATTATTGttgctgttattattaataatgaaagCTGGTTTAAAGACATGTTAAACATGTAGAAACAACGTTTAGACTTAGAAGATTAGtagaaatttaattaattaaacttaaACAAATTATGGAAAATATGGGgacttttattgttttctacCTCATTTTTTAGTTTAGTCAAAATGTATTAGTGTAAAAGTGTTCGATTATGTAGAAATATAATTCCCTATGTTGGTTATTAAAGCTCTTATGAAATCACAAACAAATCAATTTATAACCAGCTTAGTGACGCCCAGACTCGGGGGCGCGCACTGCTGCCCGAGAGCGCCGGTGATGGGAATTCGattcttttaaaatgatttggTTCAGTGAATCGAATCTCAGGAGCAAAGATTCATTGGTGCAAAGGTCCTGTACACACAGAGCAATTTCggtgtgttttttgttctaATGGCAATAGATGGATGAGAATACGTGCATAAGGATTAAAGagtcatttttattgttataaaatcCTTGACTGGTTTAATCA

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process

KEGG:

id description
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244533 lncRNA downstream 55005 32205121 ~ 32208569 (-) True G180543
TU244424 lncRNA downstream 183750 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 504136 31758098 ~ 31759438 (-) True G180366
TU244331 lncRNA downstream 520584 31742731 ~ 31742990 (-) True G180373
TU244300 lncRNA downstream 627026 31636347 ~ 31636548 (-) True G180344
TU244553 lncRNA upstream 57362 32322101 ~ 32326822 (-) True G180562
TU244564 lncRNA upstream 171586 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 191807 32456546 ~ 32457411 (-) True G180570
TU244575 lncRNA upstream 289840 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA upstream 291093 32555832 ~ 32557530 (-) True G180577
XM_022680727.1 mRNA downstream 976 32245007 ~ 32262598 (-) True tmem135
XM_007247263.3 mRNA downstream 156663 32100201 ~ 32106911 (-) True LOC103041136
XM_007247264.3 mRNA downstream 166774 32090689 ~ 32096800 (-) True LOC103041448
XM_022680726.1 mRNA downstream 191650 31894202 ~ 32071924 (-) True LOC103030555
XM_015605316.2 mRNA downstream 415605 31761901 ~ 31847969 (-) True LOC103030874
XM_007247258.3 mRNA upstream 258 32264997 ~ 32276777 (-) True cct8
XM_007247259.3 mRNA upstream 258 32264997 ~ 32276776 (-) False cct8
XM_007247255.3 mRNA upstream 78600 32343339 ~ 32428813 (-) False LOC103038234
XM_007247252.3 mRNA upstream 78600 32343339 ~ 32428813 (-) True LOC103038234
XM_022681427.1 mRNA upstream 78989 32343728 ~ 32428813 (-) False LOC103038234
TU244539 other downstream 1001 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 328780 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1305807 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3412469 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 4696882 27562974 ~ 27566692 (-) True G179578
XR_002651488.1 other upstream 912024 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3168493 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile