RNA id: TU244533


Basic Information

Item Value
RNA id TU244533
length 3367
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G180543
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32205121 ~ 32208569 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacatttatacaccaCTTTTGTGAGATTCTGTACGTCCAACTTTCTTTCAACTTTTGTCtccaaaaatgtttgtttaatttgattATGATGAAAATCAACACCATTTGAACACTCTTAACTTTTGTAAGcccttagtgttttattaggAATTAATAAGAAATACCAGATATCTCACTTGCCACAGAAGTTCAGGGAGTCTCCCACATGAGCAAGTGAgaatgtgaaagagagaaagtagagaggaataaaagagaaatagaacattcttcttttgctctctcttcaTGCTTAGTTGAATAAAGAGGTTTCTGTGTGGATGAGGCTTTGCAGTTTGGTTTGTGAAACCAGGAGACCGAGAAAATGAATCCCTACTTAGACCATATtcacactaggggtgggaatcacagggcattttttatatcatattatcaTAATACATTGCCCATGATCAAAATGTCATCACGATACTGTGATACTCTGCGATgctctgaatatatctacaacACTTCTTGGTATCCGTGTTACTGAAGACAATAAAATACTTCAACTTAAGCAAACACCTGGAATTTTGGATTTAATGGTCACAACTAATATTTTTCACCGTAGGTTTATCCTATTAATTCGGGTGAGTCATAGGGAGTTTAATTTGCTCATATCATTAATATgtagcaaactaaaacaatacaatatatcttgatatatcatgatattttatccCACCCCTACTTTCACACAACAGCAATGTagcccaaatctgatcttttctgttatacagctctggaaaaatataagagaccatttaaaaatgatgagtttctttgattttaccaaattaccaacctctggaatataatcaagaggaagatggatgatcacaagccatcagaccaccaaactgaactgcttgatcttttgcaccaggagtgcagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaccagggttattccaccaaatattgatttttgaactcttaaaactttatgaatatgaacttgttttctttgcattaattgaggtctgaaagctctataaatgctctataaatgctctaaatgacaatatttttatttgcaatttgggagaaatgttgtccgtagtttatagaataaaacaacaatgttaattttactgaaacgtaaacctataaatagcaaaatcagagaaactgattcagaaactgaaaccgtctctttatttttttagagctgtatgtgacacaaatgtgttttctgtgtggcagtgtgagcagcaaaaaacacattaaatctgCCATTTTTACTTCCGATGTGGGCCAGTTCAGTATGTGGTATTGAAATATGAATACACATCCAATTTGTGGCAATGTGACTCAGTCTGAACATCCTAATCAGAATTCACCCCACTTTTATATCAAGGAGAAGAATGAAAAATGACCCTGAGTGGACAGGATAATGGACAGCAGCAGAGAGTTAAGGACTTTAGTGGTGGGGAAATGAAGTAACAAATCCCAAAAACATCTGGCCTGATGTCTCTGTTACAATAATACTGTATAGATAGGCTTGTGTTGAAGCCACACTGTGTTTCTAGTTAATTGGCCGACACATCTACAGATCATTGCTGCAGCATCAGCCATATCTTTtgaatgaaaccgaaacttaacATGAAGCGTTGCTGTTTTAAACATGTGCATCATTTACAGAGGTGCAAAGTAACTAGttacatttaatcacattactgtaattgagtagattttatgagtaatttgtcatttttaaagtagtttttaaattaggtaattttatttttgacacaagtaatttactttactGCTTTGGAAAACTCCctattactgagtaaaaaataaaatgctgggaaaaaaactaattgtatgaataaaaaaaaaatagaattttgttctccatggcaacGCAGCTGGACTTTTcccagcaatgtttattatggtTAGTGGGAGAGACgttgtgtgaatcagctgtgtagcctggggtctgtgtgaGTGGCTCGGGGAACAAGttttctgtcgagttatgctacccatcgatatgtgcttctttacagcactgcgcatgcgccgacccacagttttttttatgatttcatgtttttaatgattattccttaagtttttactgggaacattaaacaatctgcttatgccataactttttaacagtaaagaaaaaaaaggatcatAGAAACATATGCCACTTGTTTTATGAGGttgtctgaacaaatactgcctgaaaggtccaaattattttatttaataattatttaataattatttatgatttgttttactttttttacatcaaataattaaatgtaactatgtaacttttactcaaagtaaattttaaattgagtacttttttacttttactcgagtagatctttagatgggtacttttacttttacttgagtagaattttagcaaagtaaaggtacttttacttcattacaattttttagtactttttccacctctgatcaTTTACAACGTGTGAATTGTTCAGATCGATGTCAGATATGAGTCACAATGAAATGATTGTTTGAACAGCTCAAACTTAACATCAGATCTTGAAGGTGCACCATATCTCCTGCTGTGCTGGTCATCACAATGGTCCTCTGGTCAGAAATTCAACATTTATGAATGGGATAGCGGGTGACGAATAATGTGCAACTTGACCTCGACAACAGATTACAGGTAACAGAAGCTGTACACCTACACAAAAACTTCATAATGGGTCTAGTGGGTGGAAGAACAAGGCAgccgtttctaataaagtggccagtgtttacATCCTGCTAATACAAATAACCAGAGATTTGCACATAAATAACCATGAACACTGAAATCACTGAAGTACCTTTTCATACATAATTGGACTCCTCTTTGTGTTCCATTTATCCACACacatccacccacacacacacacacacacacttacacacacacacacacacacacacacatatatggtTACATATTTACACAGTTGTCCTTGTTTCCTGTTTTGGGTCTCGTTTAAACAGAGAGAATGCAGGCTAAAGGGAATGTGCAGTGAATCCCTCAGTCCATCCATGGTGCTCAACTGTTCTCGGGTGTTTTTTGGTGTGCTTTCTTCTTGTGTCAGGGTTTAAAACACCCAGAGCAGCTCATCTCCTTGTTTGGGGACAGCTGAGGCGAGATGGTGTCTGGAACCACTGATTTGAGGATGTCGTTCTCACTGGCGATGATGTGCTTCACCAGGAAGTTTGCAGCTTCGTTGATATTTATGTTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244424 lncRNA downstream 125297 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 445683 31758098 ~ 31759438 (-) True G180366
TU244331 lncRNA downstream 462131 31742731 ~ 31742990 (-) True G180373
TU244300 lncRNA downstream 568573 31636347 ~ 31636548 (-) True G180344
TU244298 lncRNA downstream 623184 31581704 ~ 31581937 (-) True G180342
TU244530 lncRNA upstream 55005 32263574 ~ 32264739 (-) True G180540
TU244553 lncRNA upstream 113532 32322101 ~ 32326822 (-) True G180562
TU244564 lncRNA upstream 227756 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 247977 32456546 ~ 32457411 (-) True G180570
TU244575 lncRNA upstream 346010 32554579 ~ 32558540 (-) True G180576
XM_007247263.3 mRNA downstream 98210 32100201 ~ 32106911 (-) True LOC103041136
XM_007247264.3 mRNA downstream 108321 32090689 ~ 32096800 (-) True LOC103041448
XM_022680726.1 mRNA downstream 133197 31894202 ~ 32071924 (-) True LOC103030555
XM_015605316.2 mRNA downstream 357152 31761901 ~ 31847969 (-) True LOC103030874
XM_007247265.3 mRNA downstream 663646 31519076 ~ 31541475 (-) True LOC103041957
XM_022680727.1 mRNA upstream 36438 32245007 ~ 32262598 (-) True tmem135
XM_007247258.3 mRNA upstream 56428 32264997 ~ 32276777 (-) True cct8
XM_007247259.3 mRNA upstream 56428 32264997 ~ 32276776 (-) False cct8
XM_007247255.3 mRNA upstream 134770 32343339 ~ 32428813 (-) False LOC103038234
XM_007247252.3 mRNA upstream 134770 32343339 ~ 32428813 (-) True LOC103038234
TU244401 other downstream 270327 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1247354 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3354016 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 4638429 27562974 ~ 27566692 (-) True G179578
TU244539 other upstream 31610 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 968194 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3224663 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile