RNA id: TU244553


Basic Information

Item Value
RNA id TU244553
length 3501
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G180562
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32322101 ~ 32326822 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTAATGAGGAATACATTCATGCCTACTTTGAATTTGCAGTATTAATCAAACCACTTAATCATTGTGCCTCTCTGGCTTGTAAGACAAATGAACTAATTTGGGCCCAAGCTTGAAAATACCATTGCATTAAGATGAGAGAATGATCAAACCATTAAGCAGATAATCATTGTATACAAGATCAGGGTTtgcttacaaaataataaaacattttctgctgTAATGGCCAGTCTGTGATTATACAATTTGGTTTTACATACAcatatgtgtttattatttggCTGGATTAACAGCAGTTATAGTTGAGATTTAAGGCCCTTTCACACCAAGGGCTGTATTTAAGTATCGACCATGCACCTCACAGCTTAATTTAGgtcatatctgtgtgtgtttggtattgtgAGAGAGCAAGTAATCCCTGTGCAGCTCagaacacacaaaaggcatggactaattctcttaattaatcttgggtgtgttttgggcataacgtgaactAAACCAATCAACGTATAACtggccattccctttaagagacagttgtgctctgactttggtggattgctattcaAAAATCCCAACTTCTGCGCTTCTCTGACATGCATGTTCAAGCGATGAAGGTGCGCAAACAGGTCATTTACAGTAACAgcactattattttattttgtattctatttattgttgatgtaaaagttgggtctgtgcactgctgcataattttaggagaaaaaaaaacatagtgtgtgctcattttttttttacattgtatggATGAATTAAAATTAATCTGACCAATCAGATCTCTTTTAGAGTGTTTGTCTATGTGCATCTTAGTCTGATCATGTTCACAAAGAACCATGAACTACAACTCCCCATAATGAGTAgaggggaaagaaaaaaaaaaaaaattctacttggaaaaaaaaaaatactttatgtgAAAGGGCCTTTAACCAGAACATACAGATAGACCAAACATTTTATGTACATTAACACTGTACATTATAAATTAACCCCCAGATCatgtacagcaggggtgtccaaactacggcccgcgggccatttgcggcccatttccttttttggagcggcccgcgaggtattttagaaatataatgaaagttttataatgtgagattcaaagattgaacgctaggtgtcagaaacgggcctaaaagtggagagagtgcgcagtttaagagcagaaaatcgggccaaagagtctaaaagcggagagagtgcgcatttttagtgcagaaaaacagggcaaagagtctaaaagcggagagagtgcacatttctagcgcagaaaaacgggccaaagagtctaaaagcggaaagagtgcacatttctagtggtatatttcattatttgttttattacagagtctgtggcccgtgacttcaaatatatttctccttctggcccccaacaaaaaaagtttggacacccctggtgtacAGCCAACTCCATTTTCTTCAAATGCCTCAAACTGTTACTTACCATGGGGCTCACATGGGTACAACAAGTGTTGTTACTGGGACCCAATGCAGTGTGCAGTGAACAGTGAACATCCCAATGTTCAGCCCATTATGGTCCCAAAACTGACCCTGGTGGGCATCCATATGTGGAGCCAAAAGGAAACCCATGGACAAAGCTTTATGGTTCTCAGTTAGGCTACCTATACAGACCCTACATGGGCTTGTCATTTGGATTGCCTCTTAGTACATACAGACATACTATAGAGCCTCTATAAAAGTGTATATAATAGTTTCTTCTTCTGAAGGTATCTGCAAGATTCGAATGGTGATACAAGATATCAAAAACTGTGTACAAATCGCGAAGAGATCAGCAAGAACATAcagtaattataatttaaataatcccgcattaaagaagaactctggtgtgaaattgactaGGGGTggagtgaaacatgataaagagtacaaactttttttagttttttagaatagcttacctccattctcccacagcattacgaaatacagagcttttagctgatgccatgtacagaaatcactatttttacaccactaacaagctcaaagtagctccacacttcattggtagaattttgCCATCTTGAAAATAAGTCACAATAATGTGACCGACGAGCACAAACCAAACTACATCTAACATGGTCCCTTAAACACTTGCATTAGTTTTGGACtggaaatatttttagtaaactacctgtgcactttcaaagttcttgttttaaatgtcagggccctcagaattctaccaatgaatcATTGTAAAgctgttgggagcatcgactgaaagttttattttgtttttatgtattttggaatgctgggggcaaagggaatgaatgaatgaagttcaacttatatagcgcctttctagaaacccaaggacgctttttacaatttacacatttttacacacaagcacattacatccacacactggtgagaagcggcaaccaatagcgcacagcgtactctcaaccggaaacgaccggccacctggaggactgcatcgggcactacagcatttacccagaacagagtgccaatccatatctgggcacagtcatgcatacatttacacacacacaaacttacatacataccacacactaacaaacaccagatcaatttagagtattcaattttttttttttttttgggctatTTGGTTAAATGGGCTATTTAACCATAGTTTGTACTCGTtctcatgtttcactacactcCAGGTCCATTTCACACAGGATTTTACCTTTAAGACTAGGAACAAAAATGATCCTTCGTTTCAGTGAATAGTTCATATAACAGAAGTAAtcaaatgtatacatatatatatataaatcaagtATATACaaccattaaacattaaagtTGACAAAACATATATGATAACCAATCACTGATTGCACAGTTATAAGTAAAGGTTTTCGTCTtacagtaaacaaaataaagtatattttatgtgGTCTCTATTTCAAATACAGTTCATGATTTACAGATCATAGAAAACAGGAAGCACCTTTTATTGGTCGGTTTCAAGTTTGCTGATGTGGTCTGAGCAGATTTGTGGGATGGAAGTCATTGCACTCTCGGCTGCATGAGGAGAGTCAGCAGGATGGGGGTCAGGCAGTGCTGCCAGGAGCCCTGAGGGGCTCTGCGTATTGGCTTTGGCCCCGCCAGCAAGGGCCTCCAGAGCAGAGCTTGTCGAAGGCCTGGGCTCACAGCTAACATTATCGTCAGAGTCCAGGCCTGGTGCCAGTGTCTGGAGTTCAGACACAGGGCAGTGGTAGAAGCACGCTTTGGACACATGGGTCGTGAACGGGCAGTCTGCCAGCGGCGGGTACTTGGCAAACACCTGTACCTGCTCTGGCCGGAGGTCAGCCTCAGCGCACAACCTTTCGTACAGGCCGGAGTAACTCTGCCACGTCTTCAGCTTCAGCTGGTCCAGCTTCTTCTTCTCGGCTGTCAGCTTCTCCTTCTCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244530 lncRNA downstream 57362 32263574 ~ 32264739 (-) True G180540
TU244533 lncRNA downstream 113532 32205121 ~ 32208569 (-) True G180543
TU244424 lncRNA downstream 242277 32077364 ~ 32079824 (-) True G180454
TU244323 lncRNA downstream 562663 31758098 ~ 31759438 (-) True G180366
TU244331 lncRNA downstream 579111 31742731 ~ 31742990 (-) True G180373
TU244564 lncRNA upstream 109503 32436325 ~ 32445752 (-) False tiam1
TU244569 lncRNA upstream 129724 32456546 ~ 32457411 (-) True G180570
TU244575 lncRNA upstream 227757 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA upstream 229010 32555832 ~ 32557530 (-) True G180577
TU244581 lncRNA upstream 275868 32602690 ~ 32603055 (-) True G180582
XM_007247258.3 mRNA downstream 45324 32264997 ~ 32276777 (-) True cct8
XM_007247259.3 mRNA downstream 45325 32264997 ~ 32276776 (-) False cct8
XM_022680727.1 mRNA downstream 59503 32245007 ~ 32262598 (-) True tmem135
XM_007247263.3 mRNA downstream 215190 32100201 ~ 32106911 (-) True LOC103041136
XM_007247264.3 mRNA downstream 225301 32090689 ~ 32096800 (-) True LOC103041448
XM_007247255.3 mRNA upstream 16517 32343339 ~ 32428813 (-) False LOC103038234
XM_007247252.3 mRNA upstream 16517 32343339 ~ 32428813 (-) True LOC103038234
XM_022681427.1 mRNA upstream 16906 32343728 ~ 32428813 (-) False LOC103038234
XM_022681428.1 mRNA upstream 16907 32343729 ~ 32428813 (-) False LOC103038234
XM_007247253.2 mRNA upstream 16923 32343745 ~ 32428813 (-) False LOC103038234
TU244539 other downstream 59528 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 387307 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1364334 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3470996 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 4755409 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 849941 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3106410 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile