RNA id: TU244569


Basic Information

Item Value
RNA id TU244569
length 263
lncRNA type intronic
GC content 0.38
exon number 2
gene id G180570
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32456546 ~ 32457411 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgttactggcactcgtttctgttactggcactcacttctgttactggcactcgttcctgttactggaactcacttctgttactggcactcgttTCTGTTACTGTGAGTTCATtcctgaaaaaaatgtattttcatatAATGTTACCAGATATGTTGCTTTTATCCCATTTAAGTCATTAAAGCCTGTCCACAGATTAATATGGCTAAGAGCATATCCTTGCTGTCTATAATAGACAATAACTAAGGCCTAAGTgactcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244564 lncRNA downstream 10794 32436325 ~ 32445752 (-) False tiam1
TU244553 lncRNA downstream 129724 32322101 ~ 32326822 (-) True G180562
TU244530 lncRNA downstream 191807 32263574 ~ 32264739 (-) True G180540
TU244533 lncRNA downstream 247977 32205121 ~ 32208569 (-) True G180543
TU244424 lncRNA downstream 376722 32077364 ~ 32079824 (-) True G180454
TU244575 lncRNA upstream 97168 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA upstream 98421 32555832 ~ 32557530 (-) True G180577
TU244581 lncRNA upstream 145279 32602690 ~ 32603055 (-) True G180582
TU244701 lncRNA upstream 344555 32801966 ~ 32802373 (-) True G180666
TU244706 lncRNA upstream 381805 32839216 ~ 32908220 (-) False G180668
XM_007247255.3 mRNA downstream 27733 32343339 ~ 32428813 (-) False LOC103038234
XM_015605332.2 mRNA upstream 193907 32651318 ~ 32658440 (-) True sod1
XM_007247250.3 mRNA upstream 203805 32661216 ~ 32680718 (-) True scaf4
XM_022681433.1 mRNA upstream 203805 32661216 ~ 32679770 (-) False scaf4
XM_022681438.1 mRNA upstream 314394 32771805 ~ 32848226 (-) False LOC103035536
XM_022681437.1 mRNA upstream 314394 32771805 ~ 32848226 (-) False LOC103035536
TU244539 other downstream 193973 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 521752 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1498779 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3605441 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 4889854 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 719352 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 2975821 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile