RNA id: TU244576



Basic Information


Item Value
RNA id TU244576
length 1676
lncRNA type intronic
GC content 0.31
exon number 2
gene id G180577
representative True

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32555832 ~ 32557530 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AAATAGTCCAAACTCTATGTTTAGAATTAACTCGAACATCTTCTTAGGGTTCTTACGTGTTCTTTtcattgtcatttaaaacattttattacaattaatcACCCTAGGCAGTTCTAAATATGATAATCTAAATATGATAATATGTcatttaatcaaatcaaattaactaaaatgacTGAaccaaaatgaaatgaaaatgaatttaactctaCTAAATTAAATGGACCTGACCTAAACTGAATcaaaaatgaactcaaatcatatgtattaaactaaacttgaattaacttaaatgAACTGAACTATACTAGATTTACTATAATTTAGCAGAACTAAATTGAACTTAAAGTTAGACTAAACTAGACTAAACTAGAATGAACAGAAATTAGCTTAACTGATCTGACCTAAATGAAACCGAATCAAAAGTGTGTACTGAATTTAGTAGAACTCAGCTGATCTGCTCTGGTTTAAAAGAAAACTCAACTGAATCAATCCCCAAAGTGAACTGTACTGAACTTGAATTAActcaactgaactgaactgcactGGATTTACTACAACTGAActaaattgaactgaattaaatgaAACTATGCTCATCAGAATGAACAGAAATTAGTTGAGCTAAACTGCATTAAATGaaagtgaataaaaaatgaaCTCAACTCATATGTACTGAattaaatcaaactgaactgccctggtttaaaagaaaactaaaatgaaCCAATCCCAAAACTTAGCTATACTGaacttaaaataactcaactgaactgaactgtgcTGGATTTACAATAACTCAACTACACTAAATTTAACTGAATAAAGCTGAACTAGATTAATCAGAATTAACAGAAATTAGTTGAACTCAACTGAACTAAGTGAAACTGAATCAAAAATGAACTCAACTTATATGTACTAAATTTAATAGAATAAGGAATAATTCAATCCAAAGTGAACTATACTGAACTTGAATTTGCTCAACTGAACCAAACAGTGCTGGATTTACTATAACTCAACTGAACTAAATTGAACtgcattaaactaaactaaactctgATCAGAATGATCAGAAATGAGTTGAACTGAACTGACAAATGAAACTGAATCACAAACAAACTCAATTCATATGTAGTGAGCTTAATATAACTCTAAACTGAAATGCACTGGTTAAAGACAACTAAACTGAACTATACTGAACTTGCATTAACTCAACTTAACTGTGCTAAATTCAATATAACTGTAGTGGATTTACTATAATTCAACTGAAATAAATTGAACTGAATTCAACTTAACTTGACTCATCAGAATGAATAGAATTGAGCTAAACTAAATCAAAAATTACATCAACATACATGCACTGAATTTatattagtttaatttaatttaaagttgaactGCACCTGTAAAGAATTGAGTTGAACTCAACTGAATCAACCTGAACCAAAAGGAACCTAAACTGAAtctaaatttaaaatgaaatacaatGAATAGATCTGAACTGAGTCACATCAATCCAGACTGAACTGAATTAGGCGAGACCTCGGCTGAGTTGTGATGGGTGACACTGTTGTCTTCCTCATACGTTATGACAGAGTGAAGAGGGCAGATGCTTTCAGAGCATTTCATCACTTCTTTCCTGATCAGTGGGGCGTCCTGCATCACCCTCGTCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU244569 lncRNA downstream 98421 32456546 ~ 32457411 (-) True G180570
TU244564 lncRNA downstream 110080 32436325 ~ 32445752 (-) False tiam1
TU244553 lncRNA downstream 229010 32322101 ~ 32326822 (-) True G180562
TU244530 lncRNA downstream 291093 32263574 ~ 32264739 (-) True G180540
TU244533 lncRNA downstream 347263 32205121 ~ 32208569 (-) True G180543
TU244581 lncRNA upstream 45160 32602690 ~ 32603055 (-) True G180582
TU244701 lncRNA upstream 244436 32801966 ~ 32802373 (-) True G180666
TU244706 lncRNA upstream 281686 32839216 ~ 32908220 (-) False G180668
TU244709 lncRNA upstream 311396 32868926 ~ 32893107 (-) True G180668
TU244718 lncRNA upstream 385664 32943194 ~ 32943820 (-) True G180676
XM_022681431.1 mRNA downstream 86816 32436331 ~ 32469016 (-) False tiam1
XM_022681430.1 mRNA downstream 89333 32436331 ~ 32466499 (-) False tiam1
XM_007247252.3 mRNA downstream 127019 32343339 ~ 32428813 (-) True LOC103038234
XM_015605332.2 mRNA upstream 93788 32651318 ~ 32658440 (-) True sod1
XM_007247250.3 mRNA upstream 103686 32661216 ~ 32680718 (-) True scaf4
XM_022681433.1 mRNA upstream 103686 32661216 ~ 32679770 (-) False scaf4
XM_022681438.1 mRNA upstream 214275 32771805 ~ 32848226 (-) False LOC103035536
XM_022681437.1 mRNA upstream 214275 32771805 ~ 32848226 (-) False LOC103035536
TU244539 other downstream 293259 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 621038 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1598065 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3704727 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 4989140 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 619233 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 2875702 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile