RNA id: TU244706


Basic Information

Item Value
RNA id TU244706
length 1304
lncRNA type read_through
GC content 0.39
exon number 3
gene id G180668
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32839216 ~ 32908220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttccagagctgtataaaaaaaaaaacattcctgaTGCATggggttgtagaggttcctaatgattTCCTACGATAATCTATCTGATGCatttcaaatatttacagttttcaaacattttcaatcagggCAACAGTATGcagatgagcattgtcctgttggaagagTGTTTTTAGAAATGATGTGATCTGGCATTGTACAACATGacactatgggccctattttagtgatctataggtgcttgatttagggcatgtcagtttgtttgctttgctatcgtaacgacgggaaaagtatgccttgcgcaGCTTAAAACGTGCAATaggcatgcactaattctcttaattaatcatgggtgtgttttgggcgtaaagtGAAATAATTCAATCAGCcagtcacttgccattccctttaagagccaggtgtgctctgactttggacttTCTGATTGCTAATTAAATGACTGAGCTTTATAAGAGATACACCTAGACGAGCACTGCTGCACGCAATGGACTGCCAAGATAGCATTGAACAAGATACCAttgaatgtctgactgttgactgttgccTAGGCTGTATTCAGTctgtggcgcacctgtgttttctgttgccaagctagcaatatgccagaaattttccTGAACACACCCCTTTTTGAGACCACCACTCCCATCAGCATAGATcgatattcacaagcactgttgctatttaaacaatgtagGTGCAAGGCGTAAAAttggtgtaagatagggctaTAGTCTTCTGGATGGTGTAACGCGTGAGAACAAGCCAGTCAATCTTGGCCTATATTACCACAGCACTGCCTTGTTGGTAATCtctaacaaaacaaaatcagaatagcagtgcagaatatttacatttttaatcatgtatggttcctggtaacctttatcttacTCCCAAACAACAttgcaatataataaaaaaaggtaagaCAGTAAAGAATAGCATTCATagtagaaaatacaaaaatgggtCAAACACCCAATAAACATTACATGGGCAAAGTAATCGCTTTGTATAGATGGACAAaacgattataccacagttttatgagtgacattaacagccggtaatgcactttAACTGAAGCTCTGCAAagtacaggtaacctagcaacgatgcagcgcttacaaaccaaatacaaaccaaatgcaatgtcattatacaccactgggacccaaaaataagcccagcgatttgaaaatacgcattattacacaaAATTATCAGCCACCGATATCAGGTTaggagttgttattattaaaataaaagTGTAAGTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244701 lncRNA downstream 36843 32801966 ~ 32802373 (-) True G180666
TU244581 lncRNA downstream 236161 32602690 ~ 32603055 (-) True G180582
TU244575 lncRNA downstream 280676 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA downstream 281686 32555832 ~ 32557530 (-) True G180577
TU244569 lncRNA downstream 381805 32456546 ~ 32457411 (-) True G180570
TU244718 lncRNA upstream 34974 32943194 ~ 32943820 (-) True G180676
TU244719 lncRNA upstream 59178 32967398 ~ 32967655 (-) True G180677
TU244731 lncRNA upstream 127840 33036060 ~ 33036360 (-) True G180687
TU244755 lncRNA upstream 178305 33086525 ~ 33086755 (-) True G180707
TU244757 lncRNA upstream 197940 33106160 ~ 33106465 (-) True G180709
XM_007247250.3 mRNA downstream 158498 32661216 ~ 32680718 (-) True scaf4
XM_022681433.1 mRNA downstream 159446 32661216 ~ 32679770 (-) False scaf4
XM_015605332.2 mRNA downstream 180776 32651318 ~ 32658440 (-) True sod1
XM_022681429.1 mRNA downstream 254873 32436331 ~ 32584343 (-) True tiam1
XM_022680729.1 mRNA upstream 395595 33303815 ~ 33367594 (-) True LOC103028027
XM_022681442.1 mRNA upstream 465280 33373500 ~ 33395265 (-) True LOC103027697
XM_022681443.1 mRNA upstream 491135 33399355 ~ 33446115 (-) True LOC107197574
XM_022681444.1 mRNA upstream 618452 33526672 ~ 33746776 (-) True LOC103027380
XM_015605325.2 mRNA upstream 925725 33833945 ~ 33835554 (-) True LOC107197575
TU244539 other downstream 576643 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 904422 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1881449 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 3988111 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 5272524 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 268543 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 2525012 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile