RNA id: TU244709


Basic Information

Item Value
RNA id TU244709
length 3685
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G180668
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 32839216 ~ 32908220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaacaagttcatattaataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttaatcacagttttcatgcatcttggcatcatgttctcctccaccagtcttacacaatgcttttggataactttatgcctttactcctggtgcaaaaacaagcagttcagtttggtttggtttgatggcttgtgatcatccatcttcctcttgattatattctagaggttttcaatttggtaaaatcaaagaaactcatccttttttaagtggtatcttatttctttccagagctgtatataaaaaaaaaaaacattcctgaTGCATggggttgtagaggttcctaatgattTCCTACGATAATCTATCTGATGCatttcaaatatttacagttttcaaacattttcaatcagggCAACAGTATGcagatgagcattgtcctgttggaagagTGTTTTTAGAAATGATGTGATCTGGCATTGTACAACATGacactatgggccctattttagtgatctataggtgcttgatttagggcatgtcagtttgtttgctttgctatcgtaacgacgggaaaagtatgccttgcgcaGCTTAAAACGTGCAATaggcatgcactaattctcttaattaatcatgggtgtgttttgggcgtaaagtGAAATAATTCAATCAGCcagtcacttgccattccctttaagagccaggtgtgctctgactttggacttTCTGATTGCTAATTAAATGACTGAGCTTTATAAGAGATACACCTAGACGAGCACTGCTGCACGCAATGGACTGCCAAGATAGCATTGAACAAGATACCAttgaatgtctgactgttgactgttgccTAGGCTGTATTCAGTctgtggcgcacctgtgttttctgttgccaagctagcaatatgccagaaattttccTGAACACACCCCTTTTTGAGACCACCACTCCCATCAGCATAGATcgatattcacaagcactgttgctatttaaacaatgtagGTGCAAGGCGTAAAAttggtgtaagatagggctaTAGTCTTCTGGATGGTGTAACGCGTGAGAACAAGCCAGTCAATCTTGGCCTATATTACCACAGCACTGCCTTGTTGGTAATCtctaacaaaacaaaatcagaatagcagtgcagaatatttacatttttaatcatgtatggttcctggtaacctttatcttacTCCCAAACAACAttgcaatataataaaaaaaggtaagaCAGTAAAGAATAGCATTCATagtagaaaatacaaaaatgggtCAAACACCCAATAAACATTACATGGGCAAAGTAATCGCTTTGTATAGATGGACAAaacgattataccacagttttatgagtgacattaacagccggtaatgcactttAACTGAAGCTCTGCAAagtacaggtaacctagcaacgatgcagcgcttacaaaccaaatacaaaccaaatgcaatgtcattatacaccactgggacccaaaaataagcccagcgatttgaaaatacgcattattacacaaAATTATCAGCCACCGATATCAGGTTaggagttgttattattaaaataaaagcttaagtgtatatatttaccagttaatatagggtattttaagctgaaagtGAAATAGGGGACTCTTGTAATTCCACAGGTGTTGCCACTGGGGGCGCCTAAGTAACCAAAActttaattatcaaaaaaaaaaaacattttctttcaaagtcatgagcactggatgttaatctacacagatttctcttctagaaactgtttatttaggtgagtaaagcactttaatttatttacagtaagcttagatttccacaattttgattGAAATGGCGGAAAGTAGCTTGTAGTAACttgtggagtgtttataaccaaacagatcgtattttcttgtcctctttaactcaaaatcttttaataaacagaaataacgGAACTGTAGTATTAtttcaataatacactcaaggttcctgCTATAAcggcagtgccaatattacatgttatagcactccctctcatgtattattgcttcaATCTAATACTCGGCTATTAGGgcataaaacacttttttcctGGGTGCAACTCTTTTTTAAAGATGAAAACAAAGTTGGTTTGTTTGGAAAAATGAGCCAAAGGGTTTAAACACAGCACAAACTGAACCACAGTCTGCCAGCAGTTATTACTGCATTACTATTAACTAaatatcaatactgtgtttattaCTGTGTTTAAGTCGACACAGTACTGCAAAACCGAACATTGGGATATGTTGAAATGCCAGGCTGATGCCACAGAGtgtaatgaaatgtatttaGGAGTTTTGGAATGCTTGATTGAGGCTAGCCCATAACCCTGAGTAAAGTTTACTCACAAACGGTAGAGCAATAGCtgattccccccccccccccatgttAAAGAAATTGCACTCTGCCTTACTGTGTTTCATCCATCAACTGTTCCTCAATTTTTCATTAGCTTcgtcattagcattagcctatTATACCTGTGTTATTCTTACTATGCAAATATTTAAAGCTCTTTACCTTGTATCTTATGGAGAGTTACACGTGGTGTGAGCTCTCTACTGATCGTTCACCTCCACTTGCTTTAAGCAGATGGGGTTTGCTATCTCCATCCATTAAAGCAGATCCAAGCACAAGCCAATTTAAGTTCATCGTAATTAAGAAATGGGACCTtattttacaccctgcgcaaggtgcatCACGACGCTCATTGCTATCGTACACCCCGCAAACAGTCTATATTTACATAGTTTTGAATAAATCTACaatgatgggcgtggtggtctgaaagtgatgtGTGTTCTCgcaaatttctggcgtattgctatcttggcagcgaaaaacacaggtgcgctacTAACAGATTCGaacgttaaacacacacagcagttcaCAAACcaaattttacatcaacaataaacagataatacaaaataaaataacactgtcgttcctgtaaatgacctgctcacgcatctttacagcgtgaacgtgcagaagcactgcatcattaaaatagcaattcttgaaattcagagcacacctggctcttaaagggaatggcaagtaaaACGCTGATTGTTtgatttcacgttacgcccaaaacacacccaaaataaacaagagaatGTGTTTCATGTGTACATGTGTTTCgcactttttttaagccacGCAAGGCATACtattcccgtcgttacgatagcaaacaCACAatgacaccctaaatcaagccgcggtgtaaaatagggcccctgATCAAACGGTTTATCAATATATTCATAACAGTTATAACATCATATTGGTTATAGCATTCACAGTAATTATGCTGAACAATGTATCCCTACTCCAGTATCATGTTACCCTTATATTACTATTGTATGGATCTGGTACGTTATCTAATATGTAATATTCTGCATTATTCACTCATTTATGATTGTAAAATTGTAACCCATCCCTTTTCCATAGCCACAGGTTTACAGATTGCTATTTCTAAGCGAGTTATCTTTTCATTAAAGTAGTCTATATCATGCAGTGACCATGCCAGTCTGTGGAACAAAGAGGTCATTCCATGATTGTTTGTTTAAAGGGCCAGTACATTATACTGAAGgtgaaattaaataaacgattCTGAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244701 lncRNA downstream 66553 32801966 ~ 32802373 (-) True G180666
TU244581 lncRNA downstream 265871 32602690 ~ 32603055 (-) True G180582
TU244575 lncRNA downstream 310386 32554579 ~ 32558540 (-) True G180576
TU244576 lncRNA downstream 311396 32555832 ~ 32557530 (-) True G180577
TU244569 lncRNA downstream 411515 32456546 ~ 32457411 (-) True G180570
TU244718 lncRNA upstream 50087 32943194 ~ 32943820 (-) True G180676
TU244719 lncRNA upstream 74291 32967398 ~ 32967655 (-) True G180677
TU244731 lncRNA upstream 142953 33036060 ~ 33036360 (-) True G180687
TU244755 lncRNA upstream 193418 33086525 ~ 33086755 (-) True G180707
TU244757 lncRNA upstream 213053 33106160 ~ 33106465 (-) True G180709
XM_022681438.1 mRNA downstream 20700 32771805 ~ 32848226 (-) False LOC103035536
XM_022681437.1 mRNA downstream 20700 32771805 ~ 32848226 (-) False LOC103035536
XM_022681436.1 mRNA downstream 20700 32771805 ~ 32848226 (-) False LOC103035536
XM_022681435.1 mRNA downstream 20700 32771805 ~ 32848226 (-) True LOC103035536
XM_007247250.3 mRNA downstream 188208 32661216 ~ 32680718 (-) True scaf4
XM_022680729.1 mRNA upstream 410708 33303815 ~ 33367594 (-) True LOC103028027
XM_022681442.1 mRNA upstream 480393 33373500 ~ 33395265 (-) True LOC103027697
XM_022681443.1 mRNA upstream 506248 33399355 ~ 33446115 (-) True LOC107197574
XM_022681444.1 mRNA upstream 633565 33526672 ~ 33746776 (-) True LOC103027380
XM_015605325.2 mRNA upstream 940838 33833945 ~ 33835554 (-) True LOC107197575
TU244539 other downstream 606353 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 934132 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 1911159 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 4017821 28850690 ~ 28851105 (-) True G179816
TU243339 other downstream 5302234 27562974 ~ 27566692 (-) False G179578
XR_002651488.1 other upstream 283656 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 2540125 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile