RNA id: XM_022681440.1


Basic Information

Item Value
RNA id XM_022681440.1
length 1456
RNA type mRNA
GC content 0.40
exon number 6
gene id ufm1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33050242 ~ 33067932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACCGCAAATACAGTTACAGCTTTTGAAATACAACTGGTTTTAATGAGTCCACGCGTTTAAATTAAGAGTATGAGAGATAAATGTGGACTAACTGACAGAGTTCAGACTGCAGTGATGTGTGTGAAGGAGGAAAATAAGGCTGAAGCAGACTGACTCTGTTCTCTGAATGGGTGACGTGTTCTAAAGGGTCCTCGGCGCTGTTCCTGCTGGGTGTAAACAGTGTGCTGTTCACTGGCTCTGCATTAATCATGTCTAAAGTAACGTTTAAAATCACCCTGACGTCCGACCCCCGGCTACCTTACAAAGTATTAAGTGTGCCTGAAAGCACGCCCTTCACGGCGGTGCTGAAGTTTGCAGCAGAAGAgtttaaagtgcCTGCTGCTACCAGCGCCATTATCACAAATGATGGCATCGGAATCAATCCAGCACAAACAGCAGGAAACGTGTTCCTAAAACATGGCTCAGAGCTTCGCATCATTCCACGAGACAGAGTCGGAGCCGGCTGCTGTCTGACGAGTATCTGACTGTTCTGGGATTATTCTTCACCTCAGATGACTGACCTGCTCGTGTATTTATTGTCTGGCCCTGAGCTGTCAAAACTTGCGCCTTATAACAtctgcaacagcagcagctacaaATCTCATCTCCCTGCCTGGACCTCCACACTCGATGTCCCCCCTCGTCCCCAGTAATAACTGCTTTCTGGACACTTGGCCTGCAGTAAATTTCATTTTTCCCACCACTGTAAACGACTGAAATCCACCATTTCTCTCAAGACACCTTGCTATTTTAGCTGTGTCACAGTGCTTGCCCAGTTTTGTAATGTTgtgtattgttttctttttatacaaCATTCTTCACATTTTTCTTCTCacattctctttatttttgtgCTGCTGCGTATCTTAAAGTCTTATGGTTAGAGTTTGTGCCGATGGCCAAATTAAagcacatttattttgtatCGCACCTTGTTTAACAGCTCttgggaagttttttttttttttttttaaatataaaactttcACTATTTTTTCTGGCTTCATCAGGTAATCAGGTAGAGTTTTGTTTAAGCTCCACTGTTATATTCCTTGAAGGCCATAATAGGATATATAAACCATAATTCCTCTGGTTTTAACAACAAAGCAAGGCAGCAACTCTCAAAAAAAAGGGGAGAGGGGCTTTTATTTTGCCTATAGCTGTTTTAGCATGGTTAACTATGCAGAAAATAATGTAATCTGACGGTAACTGAagaaattacaattacaattatccCATTACACCATGTCTACCTGTTTAACTGtattaaacaaatattacagtaaaataaataaaacaaaatgaaaactgaTATCAAACTGTTTACATGCTCACCATGTGAAATTTGCTAATGATTTGCTAAAACACACACCTTCCTTTCCCTTAGTATTAAATTATAATGGCATATACACCCA

Function

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12162 UFM1; ubiquitin-fold modifier 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244729 lncRNA upstream 13881 33036051 ~ 33036361 (+) True G180686
TU244673 lncRNA upstream 82700 32967211 ~ 32967542 (+) True G180643
TU244672 lncRNA upstream 85982 32963941 ~ 32964260 (+) True G180642
TU244634 lncRNA upstream 247855 32800787 ~ 32802387 (+) True G180612
TU244636 lncRNA upstream 247855 32800787 ~ 32802387 (+) False G180612
TU244756 lncRNA downstream 38251 33106183 ~ 33106534 (+) True G180708
TU244758 lncRNA downstream 38654 33106586 ~ 33106803 (+) True G180710
TU244777 lncRNA downstream 185350 33253282 ~ 33280927 (+) True G180722
TU244781 lncRNA downstream 213725 33281657 ~ 33283041 (+) True G180726
TU244791 lncRNA downstream 246578 33314510 ~ 33314931 (+) True G180734
XM_022681434.1 mRNA upstream 340988 32704931 ~ 32709254 (+) True LOC103036259
XM_007247311.2 mRNA upstream 358758 32687753 ~ 32691484 (+) True LOC103029275
XM_022681432.1 mRNA upstream 399910 32643512 ~ 32650332 (+) True LOC111195090
XM_007247257.3 mRNA upstream 727294 32306457 ~ 32322948 (+) False bach1
XM_022680728.1 mRNA downstream 42059 33109991 ~ 33275686 (+) True LOC103028331
XM_015605337.2 mRNA downstream 218503 33286435 ~ 33297195 (+) True LOC107197579
XM_022681441.1 mRNA downstream 218822 33286754 ~ 33297195 (+) False LOC107197579
XM_022681445.1 mRNA downstream 790744 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA downstream 790744 33858676 ~ 33905991 (+) False synj1
TU244438 other upstream 776444 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 1616333 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 1899147 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 5524801 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 5524853 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 1105027 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 2748103 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 2748107 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 2762749 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 3138635 36206567 ~ 36207895 (+) True G181734

Expression Profile