RNA id: TU244791


Basic Information

Item Value
RNA id TU244791
length 241
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G180734
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33314510 ~ 33314931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaatgttgtcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244781 lncRNA upstream 31469 33281657 ~ 33283041 (+) True G180726
TU244777 lncRNA upstream 33583 33253282 ~ 33280927 (+) True G180722
TU244758 lncRNA upstream 207707 33106586 ~ 33106803 (+) True G180710
TU244756 lncRNA upstream 207976 33106183 ~ 33106534 (+) True G180708
TU244744 lncRNA upstream 246588 33050435 ~ 33067922 (+) False ufm1
TU244804 lncRNA downstream 58643 33373574 ~ 33395329 (+) True G180746
TU244884 lncRNA downstream 151639 33466570 ~ 33466780 (+) True G180804
TU244888 lncRNA downstream 199591 33514522 ~ 33539422 (+) True G180807
TU244907 lncRNA downstream 283417 33598348 ~ 33599355 (+) False G180826
TU244908 lncRNA downstream 283664 33598595 ~ 33599355 (+) True G180826
XM_015605337.2 mRNA upstream 17315 33286435 ~ 33297195 (+) True LOC107197579
XM_022681441.1 mRNA upstream 17315 33286754 ~ 33297195 (+) False LOC107197579
XM_022680728.1 mRNA upstream 38824 33109991 ~ 33275686 (+) True LOC103028331
XM_022681440.1 mRNA upstream 246578 33050242 ~ 33067932 (+) True ufm1
XM_022681434.1 mRNA upstream 605256 32704931 ~ 32709254 (+) True LOC103036259
XM_022681445.1 mRNA downstream 543745 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA downstream 543745 33858676 ~ 33905991 (+) False synj1
XM_022681452.1 mRNA downstream 543745 33858676 ~ 33905991 (+) False synj1
XM_022681449.1 mRNA downstream 543745 33858676 ~ 33905991 (+) False synj1
XM_022681448.1 mRNA downstream 543745 33858676 ~ 33905991 (+) False synj1
TU244438 other upstream 1040712 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 1880601 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2163415 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 5789069 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 5789121 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 858028 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 2501104 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 2501108 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 2515750 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2891636 36206567 ~ 36207895 (+) True G181734

Expression Profile