RNA id: TU244884


Basic Information

Item Value
RNA id TU244884
length 211
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G180804
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33466570 ~ 33466780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaaaaccactccaaatgatccagaatgcagcagcacgtctggtcttcaaccagccaaaacgggctcatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaaactcttacaatcgcctacaaggtgatacagaacagctccttcctacctgcactgatcactcctgaaggcttacgctacctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244804 lncRNA upstream 71241 33373574 ~ 33395329 (+) True G180746
TU244791 lncRNA upstream 151639 33314510 ~ 33314931 (+) True G180734
TU244781 lncRNA upstream 183529 33281657 ~ 33283041 (+) True G180726
TU244777 lncRNA upstream 185643 33253282 ~ 33280927 (+) True G180722
TU244758 lncRNA upstream 359767 33106586 ~ 33106803 (+) True G180710
TU244888 lncRNA downstream 47742 33514522 ~ 33539422 (+) True G180807
TU244907 lncRNA downstream 131568 33598348 ~ 33599355 (+) False G180826
TU244908 lncRNA downstream 131815 33598595 ~ 33599355 (+) True G180826
TU244979 lncRNA downstream 338457 33805237 ~ 33847775 (+) False G180894
TU244980 lncRNA downstream 338457 33805237 ~ 33847775 (+) False G180894
XM_015605337.2 mRNA upstream 169375 33286435 ~ 33297195 (+) True LOC107197579
XM_022681441.1 mRNA upstream 169375 33286754 ~ 33297195 (+) False LOC107197579
XM_022680728.1 mRNA upstream 190884 33109991 ~ 33275686 (+) True LOC103028331
XM_022681440.1 mRNA upstream 398638 33050242 ~ 33067932 (+) True ufm1
XM_022681434.1 mRNA upstream 757316 32704931 ~ 32709254 (+) True LOC103036259
XM_022681445.1 mRNA downstream 391896 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA downstream 391896 33858676 ~ 33905991 (+) False synj1
XM_022681452.1 mRNA downstream 391896 33858676 ~ 33905991 (+) False synj1
XM_022681449.1 mRNA downstream 391896 33858676 ~ 33905991 (+) False synj1
XM_022681448.1 mRNA downstream 391896 33858676 ~ 33905991 (+) False synj1
TU244438 other upstream 1192772 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 2032661 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2315475 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 5941129 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 5941181 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 706179 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 2349255 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 2349259 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 2363901 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2739787 36206567 ~ 36207895 (+) True G181734

Expression Profile