RNA id: TU244980


Basic Information

Item Value
RNA id TU244980
length 364
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G180894
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33805237 ~ 33847775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaatagtgagagattctcctgatctggaaGTAGTCATCCTCAAGTCTTTTTGTTCATAGTTGAAGTATGGTTTCTTCCTGTGATGCTAATAGGGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244907 lncRNA upstream 205882 33598348 ~ 33599355 (+) False G180826
TU244908 lncRNA upstream 205882 33598595 ~ 33599355 (+) True G180826
TU244888 lncRNA upstream 265815 33514522 ~ 33539422 (+) True G180807
TU244884 lncRNA upstream 338457 33466570 ~ 33466780 (+) True G180804
TU244804 lncRNA upstream 409908 33373574 ~ 33395329 (+) True G180746
TU245017 lncRNA downstream 94114 33941889 ~ 33945586 (+) True G180912
TU245018 lncRNA downstream 97890 33945665 ~ 33948938 (+) True G180913
TU245029 lncRNA downstream 125169 33972944 ~ 33973145 (+) True G180921
TU245042 lncRNA downstream 158188 34005963 ~ 34006814 (+) True G180931
TU245055 lncRNA downstream 194843 34042618 ~ 34043415 (+) True G180937
XM_015605337.2 mRNA upstream 508042 33286435 ~ 33297195 (+) True LOC107197579
XM_022681441.1 mRNA upstream 508042 33286754 ~ 33297195 (+) False LOC107197579
XM_022680728.1 mRNA upstream 529551 33109991 ~ 33275686 (+) True LOC103028331
XM_022681440.1 mRNA upstream 737305 33050242 ~ 33067932 (+) True ufm1
XM_022681434.1 mRNA upstream 1095983 32704931 ~ 32709254 (+) True LOC103036259
XM_022681445.1 mRNA downstream 10901 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA downstream 10901 33858676 ~ 33905991 (+) False synj1
XM_022681452.1 mRNA downstream 10901 33858676 ~ 33905991 (+) False synj1
XM_022681449.1 mRNA downstream 10901 33858676 ~ 33905991 (+) False synj1
XM_022681448.1 mRNA downstream 10901 33858676 ~ 33905991 (+) False synj1
TU244438 other upstream 1531439 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 2371328 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2654142 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 6279796 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 6279848 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 325184 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 1968260 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 1968264 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 1982906 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2358792 36206567 ~ 36207895 (+) True G181734

Expression Profile