RNA id: TU245017


Basic Information

Item Value
RNA id TU245017
length 572
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G180912
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33941889 ~ 33945586 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctaattggttcgtttaataaattagctgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggatcgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgcccaacaggaagtcggccatattggaatttgtaatatttttacacatttttcacaaactcatttaaactgctcctaaagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataactgccaaaggattagttgatcggtaaaacggtgacccaatggcgagcaattgattcactagagacgcaacactaaaccaaagtgaaaccatgacacggtcagaaaacagagaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244979 lncRNA upstream 94114 33805237 ~ 33847775 (+) False G180894
TU244980 lncRNA upstream 94114 33805237 ~ 33847775 (+) False G180894
TU244978 lncRNA upstream 94114 33846794 ~ 33847775 (+) True G180894
TU244907 lncRNA upstream 342534 33598348 ~ 33599355 (+) False G180826
TU244908 lncRNA upstream 342534 33598595 ~ 33599355 (+) True G180826
TU245018 lncRNA downstream 79 33945665 ~ 33948938 (+) True G180913
TU245029 lncRNA downstream 27358 33972944 ~ 33973145 (+) True G180921
TU245042 lncRNA downstream 60377 34005963 ~ 34006814 (+) True G180931
TU245055 lncRNA downstream 97032 34042618 ~ 34043415 (+) True G180937
TU245061 lncRNA downstream 160913 34106499 ~ 34107595 (+) True G180943
XM_022681460.1 mRNA upstream 23148 33911819 ~ 33918741 (+) False c20h21orf59
XM_007247239.3 mRNA upstream 23154 33911224 ~ 33918735 (+) True c20h21orf59
XM_022681445.1 mRNA upstream 35898 33858676 ~ 33905991 (+) True synj1
XM_022681450.1 mRNA upstream 35898 33858676 ~ 33905991 (+) False synj1
XM_022681452.1 mRNA upstream 35898 33858676 ~ 33905991 (+) False synj1
XM_022681463.1 mRNA downstream 15370 33960956 ~ 33967651 (+) True mis18a
XM_022681464.1 mRNA downstream 63335 34008921 ~ 34123671 (+) True LOC103026520
XM_022681465.1 mRNA downstream 63335 34008921 ~ 34123671 (+) False LOC103026520
XM_022680730.1 mRNA downstream 227338 34172924 ~ 34328970 (+) True LOC103026201
XM_022681473.1 mRNA downstream 388990 34334576 ~ 34505966 (+) False LOC103024954
TU244438 other upstream 1668091 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 2507980 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2790794 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 6416448 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 6416500 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 227373 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 1870449 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 1870453 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 1885095 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2260981 36206567 ~ 36207895 (+) True G181734

Expression Profile