RNA id: TU245055


Basic Information

Item Value
RNA id TU245055
length 438
lncRNA type intronic
GC content 0.37
exon number 2
gene id G180937
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 34042618 ~ 34043415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATCTGATCCTGTACATCATTTCCTATCTGATCCTGTACAGCATTTCCTATCTGATCCTGTACAATATTTCCTATCTGATCCTGTACATCATTTCCTATCTGATCCTGTACATCATTTCCTATCTGATCCTGAACAACATTTCCTATCTGATCCTGTACATCATTTCCTATCTGATCCTGTACAGCATTTCCTATCTGATCCTGAACAATATTTCCTATCTGATCCTGTACAGCATTTCCTATCTGATCCTGTACAATATTTCCTATCTGATCCTGTACAATATTTCCTATCTGATCCTGAACAATATTTCCTATCTGATCCTGTACAACATTTCCTATCTGATCCTGCACATTCTCATTATTGTGAACAGTTACACTGAAAGCTTGATTAGACCCAGATGACAAACTGTGTGAATGTTGATTTTCATTATCCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245042 lncRNA upstream 35804 34005963 ~ 34006814 (+) True G180931
TU245029 lncRNA upstream 69473 33972944 ~ 33973145 (+) True G180921
TU245018 lncRNA upstream 93680 33945665 ~ 33948938 (+) True G180913
TU245017 lncRNA upstream 97032 33941889 ~ 33945586 (+) True G180912
TU244980 lncRNA upstream 194843 33805237 ~ 33847775 (+) False G180894
TU245061 lncRNA downstream 63084 34106499 ~ 34107595 (+) True G180943
TU245180 lncRNA downstream 206592 34250007 ~ 34250467 (+) True G181027
TU245193 lncRNA downstream 223810 34267225 ~ 34268813 (+) True G181033
TU245197 lncRNA downstream 228474 34271889 ~ 34322693 (+) True G181034
TU245200 lncRNA downstream 266710 34310125 ~ 34391769 (+) True G181036
XM_022681463.1 mRNA upstream 74967 33960956 ~ 33967651 (+) True mis18a
XM_022681460.1 mRNA upstream 123877 33911819 ~ 33918741 (+) False c20h21orf59
XM_007247239.3 mRNA upstream 123883 33911224 ~ 33918735 (+) True c20h21orf59
XM_022681459.1 mRNA upstream 137978 33858676 ~ 33904640 (+) False synj1
XM_022680730.1 mRNA downstream 129509 34172924 ~ 34328970 (+) True LOC103026201
XM_022681473.1 mRNA downstream 291161 34334576 ~ 34505966 (+) False LOC103024954
XM_022681466.1 mRNA downstream 304812 34348227 ~ 34507321 (+) True LOC103024954
XM_022681468.1 mRNA downstream 304812 34348227 ~ 34507321 (+) False LOC103024954
XM_022681467.1 mRNA downstream 304812 34348227 ~ 34507321 (+) False LOC103024954
TU244438 other upstream 1768820 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 2608709 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2891523 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 6517177 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 6517229 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 129544 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 1772620 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 1772624 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 1787266 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2163152 36206567 ~ 36207895 (+) True G181734

Expression Profile