RNA id: TU245880


Basic Information

Item Value
RNA id TU245880
length 4513
RNA type TUCP
GC content 0.35
exon number 6
gene id LOC103024766
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35816035 ~ 35842871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGtaaaattctcatttgtgaaagttgggtttaatgccactttgaaataaagttggaaaaaagtaagcaattatattatttagtcatatttttccaaaaaataactgaaaacatacttaaatgtggtatatcatgatatatatcgttatcgtgatataaaaaaacctccatatcgtgatatatgatttttcccttATCACCCAGCACTAGTTTAAAGTAACTCATGGTTGGCCAAATATGTTTAAAACTCTACACAACTTTTACTCCTGTGAGTGAAATGAAAGTTTCCTCTCTCCTGACAGAGGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAGGACAGCAACAGTGCAAAGACTGATAATGGTCTGACCGTCACCGTCACTATGGAGAGTGAGTCTTAAACATGATCTTCAGGAAAGAGTGTACCAAGGCCAGTCTGATCACATTCGGAGCTGTGAACTCAACGTTTAACTCCAGAGACCACAGAGCCAATCCAAATGCCTTAAGCTTAGCAGCTCCCATCGATCGCCATGGAAACCGGTAACCAATGAACACGCATGTGAAGCATCATCCATGTTACTATGgacttttctcatttctcagtactgtctctactgtactAATGGGACCTCTCTCAATATCACAtgacttatatacacacacaatacacacacacaatacaccacacacacacacaacacacaatacacacacacaatacacacacacaatacacacacaatacacacacacaatacacacactcacacacacacacaatacacacaaacacaaactcacacacacacaatacacacacacacaatacacacacaatacacacacatacaaacacacacaaacacaaactcacacacacacacaatacacacactcacacacacacaatacacacacacacaccaatacacacacaatacacacacaatacacacacacacacacacacacaatacacacactcacacacaatacacacacacaatacacacacatacaaacaaacacaaactcacacacacacttttttgaCCAAATAATCcagttgaattttttttgttgtttttgtttcttttatttgaaCTGATTTTGGAAATCTTATGTTTTTCACTTTGACTTTTTTAAGACAAACCAGATAAACGATAAATGAACTGATTCTGGAACAGTGATGGTACTTGAAACacttatctttttttgtttgttgtttttttttattttttattataaaaatatttttatcaccattaagtaaagaaaacattgGTGTAATTAGTAATAAACACTACAGTCTAATCAGTGCGCAGAAGAACAAGAGCAGGATTGTTAGGCCTGTTGAAGgctagtttattttatttattttttttatctaatctgTTTGTCACTTTTCTAACAGATGGTGGTTTTCCgtgctcaaaaaaataatccagttatttaaaaaaaaaagaacagaaaatctTTTGACTTGAAGCACAGAGAGAAGCCTGTGGGCAAACGCTGaagtaaaatgtgaaatgttgtttttaaatacttttctaACTTTCTGTAGAGATTCAGAGCAGCTTAATGTTGGATTAAATAATGCAGGAAAGTGTTTCTCTGTTATCAAGCTCTCTGAAATGCTTCTTCTTTTGAATGAGGGCTTAAATGAGCAACTTTCTGTTTGTAATTTGCATCAGAATCTGAAGCTGAGAGCGGGTACTAAATTATTTCCCATTAGAAGCTCATTAAACAGGATAAAATCATCCTCACATTTCAGCTTCGCTCTTCTGAGACTTAACAACTGATTCTGTGGCATTACTGAACCACCTCAGAGTCTCTTCAGCCCTGAACAAGACCTGCATTCTTAGAGtttattcaggagtttattcTGTTAATCAAACTAAGCAAATTTAACTTCTCATCAGACGTAATAAAACGGATAGAATCCTATCTTTCGAACTGTTCACAGTCTGTTAGGATCAGTGACTCCCACTCCCCGCCCCTCGCTCTGTCCACTGGGGTACCTCAGGGTTCTATTTTGGGGCCTCTGTTATTTTCACTTTATATAAATGACTTGCCCTCAGCATACAGATATATGCAGATATGCACATGTAGCTGAAAAACTTCTAAACAATCTCTGGCCCATGTCTCTGAATGGCGTAAATAACATAACAACGTAAATAAAACAGTTTCGATTTTATAATAAAGCAGATATTTATGTGACaggtgaaaaatataaaatgataaaatgtgttGTCTGAATTTAAGCATCTACGTATCTTAACAGATTCCAAATTATTATTCATGTTGTTTTTAGGTAGACCATTTTAAGATCTGTCCAGAGACAACGGATGAAAAAAGGCCTTAAGGCTGATTCTGGtgcatttacagtaatgttaattaatgtacactgtccctgttaaataagctattaaataaaataaatattcaggAGTTGTTGGTACAGTGTAGTGTTGGTGAGTCAGATTAGTCTCGGGAACTTGGTGTTAGGAAAGCATTTTAGAGCAAAGGGTGCTTCTACAGACAGGATAAAAGTATTATTCTACTTATTAATATTGTAGGGCGATATGATGAGCAGGAAGCGCGTCCCATTAAGAAGAGATACCTGCACTCATCTCTTTCTGCAACAACtgcttatatttaaaaataacacaccAGTAAAACAGATACTCATTATAATGGTATCTATACATTTAGGATAAACTGAAATGAAAGAGAGCGTGTTATAAACAATAACTGGATTACCATTTCAAATTAGAGCTAAAAATCAGCTGAATAATAGAAACTAAAGCTTAGCTGAACACATGATGGATTAAAAAGACCTGTTTCTACAATAAAACTAATGATCTAATGATAtcatctaaatatatatttcttctttAAGTGCTTATACATTTAATGCTATAAGTACTTTTCATGATGTTGCTCACATAGTTTTACAGAAGTGCAGGCAATTTCATTTAaacaaattacttttaattacgaACCGTGAAGACTTCACTAAAAAGGGCATTACTAAAAGTATCTTTGTTTGAAAAAGAGATTTGCTGCTTTTTGGTatctgctattttttatttgctattttttattttatttcatataatttctttaaaaaaaaaaatccaaaatgtgataataaaaaaaaaacaataaaacttgaaaacagaaaaaaatcaatcagaTTTTATAGGGCAGCAATAGTGCCATCTAGCTCTCAGATTAGGAACTGCAGCCTTAAACTGCACTGCTGCAACCTGTAACATGGATCATATAATCTGACCAGCTCTCAGCATAGGCTATAAACATTGTCCAATCACCAActagatatttttatattttttcagaaaTCAGTCAACACCATTACATAGCTGATCAATACATCTGTCTCTGATGAcagataccaaaaaaaaaaaaatctgaatagaTTACAGGAGTATTTAGAATATTACACAGCTATTAAACcgcttaaatataaatgttatattttaaattattgaaatattaattctataaaataagtaatttttttatttacaatccAGTTGATCCCAAACTTCTGAATGCTGGTGAATCTGGATCAGGACTTTAGGATAAAGTGTCTTTAGGAATGCAGCTCTTGGGTCTTCAGGTTTATGAATTGGTTTAATAGATTATAATTTCAGTTCTTTGAAGAACTCGGGTAAAAGAGAGGTTAGAAAGTAGAAGCTTGTCTTGTATTTCCCATAATCTGATCATTCTCACTCTGTACTTAATCAAaataatattagcattagcattagcattagcactcaCACGGTTCATTCATGTGCTTCAGAAGTTGCTCATTTTAAGGTTTAAAACATGAgctgctctttttttattttatttttgtttttatattttgatgtcAGCTGCCTTTTACAAAGTGTCAATATGTTATAATGaaagaccaatagaaatactccaaaatactgtttatattttGATATGTGAATACCATTATCAGCCATAACAGCAAAGCCACACGTCTGATGTTCAACAGGTCCGACTCATTCTGCCAAAACAGCTCGGATTTATCAATTAGAGAACTCTAACAGAATGCTGTGGCTGTATTTATCTGTATTATCCTGGCACTGAGACTAGCAGCAGATCTTCCAGTCCAGTCAGGTTTAGATGGGCTAACCTTCACCAGTGTTCACCAGTTTTCTTTcccactaggggtgtcacgattctctaaatcctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245869 lncRNA upstream 37990 35787101 ~ 35792691 (+) True G181556
TU245867 lncRNA upstream 37990 35790216 ~ 35792691 (+) False G181556
TU245868 lncRNA upstream 39563 35790216 ~ 35791118 (+) False G181556
TU245870 lncRNA upstream 40194 35790216 ~ 35790487 (+) False G181556
TU245856 lncRNA upstream 127730 35701158 ~ 35702951 (+) False LOC103044041
TU245912 lncRNA downstream 18330 35861201 ~ 35901409 (+) True G181586
TU245932 lncRNA downstream 78874 35921745 ~ 35922340 (+) True G181605
TU245946 lncRNA downstream 143194 35986065 ~ 35989603 (+) True G181614
TU245947 lncRNA downstream 143194 35986065 ~ 35989603 (+) False G181614
TU245948 lncRNA downstream 158808 36001679 ~ 36002625 (+) True G181615
XM_022681509.1 mRNA upstream 41444 35736965 ~ 35789237 (+) True LOC103024448
XM_022681508.1 mRNA upstream 127686 35685004 ~ 35702995 (+) True LOC103044041
XM_022680734.1 mRNA upstream 201219 35622099 ~ 35629462 (+) True LOC111194993
XM_022680733.1 mRNA upstream 212407 35607772 ~ 35618274 (+) True LOC103023820
XM_022680732.1 mRNA upstream 223088 35600483 ~ 35607593 (+) True LOC107197592
XM_007229775.3 mRNA downstream 132606 35975477 ~ 36166303 (+) True LOC103047081
TU245165 other upstream 1580867 34172959 ~ 34249814 (+) False LOC103026201
TU244438 other upstream 3556883 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 4396772 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 4679586 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 8305240 27524318 ~ 27525441 (+) True LOC103038954
TU246095 other downstream 363696 36206567 ~ 36207895 (+) True G181734

Expression Profile