RNA id: XR_002651490.1


Basic Information

Item Value
RNA id XR_002651490.1
length 1177
RNA type misc_RNA
GC content 0.48
exon number 11
gene id LOC103024766
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35816035 ~ 35842871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAATTTTCCGGGGTAAAGCCCCTCTTTGTTTGGCTCAGCTGTTTCTGGCCGGACTGAGGGACgtcactgcctctctctctctctctctctctctctctctctctctctctctctctctctttttttccatccctctctctctccgcggCCGGATTAAAGATGGCGCCCTCTCGTGTGTTGAGATGCTGTCAGCGGGGCTTATCGTGGATCCCTGTTATCTTCATTAACCTGGTCGTATGCTGGTCCTACTACGCCTACGTCGTGCAGCTCTGCATCTacACAATCCCTAACCCTGAAGAGCAAGttaTTTATCTGGTAGTCTTTCATGTTTGCTTCGTAATGTTTATGTGGTCATACTGGAAAACTATCATTTCCAAGCCCAGCAATCCTTCAAAGGAGTTCTTTTTGCCGAAGGCAGAAAAGGAGCAATATGAAAAGGAGGAGAGGCCGGAAGCCCAGCAGGAGATCCTCAAGAAAGTGGCCAAAAATTTACCCATTTACACTCGTACAGGCTCTGGAGCAATCCGCTACTGTGACTGCTGTCAGCTGATCAAACCGGACAGATGTCATCACTGCTCTACCTGTGACCAGTGTGTTCTAAAAATGGATCATCACTGCCCCTGggtcaATAACTGTGTGGGTTTCTCAAACTACAAGTTCTTTGTGCTGTTCCTGGCGTACTCCATGctgtactgtgtttttattgcgTCCACCGTATTGCAGTATTTCATCAAATTCTGGACAAATCAGATAGACACTCACGCCAAGTTCCACGTGCTGTTCCTCTTCTTCGTGGCAGCCATGTTCTTCGTCAGCATCATGTCCCTGTTCACCTACCACATCTGGCTCATCGCCAAGAACATGACGACTATAGAGGCCTCAGAGCGCCGGTGTTCAGAAACGGCCCTGATAAAAACGGCTTTACTGTGGGCTTCTACAAGAATCTCACCCAGGTTTTTGGAGACCAAAAGAGATACTGGTGCTTACCTGTTTACACCAGTTTGGGAGATGGTTATACATTCCCCACTCGATTAGTCAACCTTGATTCTGAACAAGGAAATGTAGACCACCAGGCCGACCCAAAAAGTTCTGTAGACGGCCAAGTCAACAGCAGGCCTCTGAGTGACTCACTGAACCATCTCCTGAGCAACGATGTGCATTCAGATGAACAGAAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245869 lncRNA upstream 23348 35787101 ~ 35792691 (+) True G181556
TU245867 lncRNA upstream 23348 35790216 ~ 35792691 (+) False G181556
TU245868 lncRNA upstream 24921 35790216 ~ 35791118 (+) False G181556
TU245870 lncRNA upstream 25552 35790216 ~ 35790487 (+) False G181556
TU245856 lncRNA upstream 113088 35701158 ~ 35702951 (+) False LOC103044041
TU245912 lncRNA downstream 25004 35861201 ~ 35901409 (+) True G181586
TU245932 lncRNA downstream 85548 35921745 ~ 35922340 (+) True G181605
TU245946 lncRNA downstream 149868 35986065 ~ 35989603 (+) True G181614
TU245947 lncRNA downstream 149868 35986065 ~ 35989603 (+) False G181614
TU245948 lncRNA downstream 165482 36001679 ~ 36002625 (+) True G181615
XM_022681509.1 mRNA upstream 26802 35736965 ~ 35789237 (+) True LOC103024448
XM_022681508.1 mRNA upstream 113044 35685004 ~ 35702995 (+) True LOC103044041
XM_022680734.1 mRNA upstream 186577 35622099 ~ 35629462 (+) True LOC111194993
XM_022680733.1 mRNA upstream 197765 35607772 ~ 35618274 (+) True LOC103023820
XM_022680732.1 mRNA upstream 208446 35600483 ~ 35607593 (+) True LOC107197592
XM_007229775.3 mRNA downstream 139280 35975477 ~ 36166303 (+) True LOC103047081
TU245165 other upstream 1566225 34172959 ~ 34249814 (+) False LOC103026201
TU244438 other upstream 3542241 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 4382130 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 4664944 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 8290598 27524318 ~ 27525441 (+) True LOC103038954
TU246095 other downstream 370370 36206567 ~ 36207895 (+) True G181734

Expression Profile