RNA id: XM_007229759.3


Basic Information

Item Value
RNA id XM_007229759.3
length 1783
RNA type mRNA
GC content 0.54
exon number 8
gene id smad9
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35239448 ~ 35251025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACGCCGGGCGCTGCTGCTGCCGTGGAGTCCAAACACGCGCTACACCTCCAATCAGAGCGAGGCTGGAGCGGCCAGGCAGAAAACACGGCGCCGCGCAGAGACAGCAgataaaaacaggagaaaagCAAAGAAAAGGAGTAACATCCAGACTGTGGGTTTCCCAAAGAAAACATCCCCATTGAGGGGTTCACCGTCTAGTTCAGCTGGATCTTGGCTGAGAGGGATTAGAACAGAAAAACTCTTTAAGAGACTCTTTATTTTCTCCTCAGCCACTGTGGTCCTGCACCTTGCACTGATGCACTCCACCACGTCCATCACCTCCCTGTTTTCTTTCACCAGCCCGGCGGTGAAGCGACTGCTGGGCTGGAAGCAGGGAGATGAGGAGGAGAAGTGGGCCGAGAAGGCTGTGGACTCTCTGGTGAagaaactgaaaaagaaaaaaggagcaaTGGAAGAACTGGAGAAGGCATTGAGCTGTCCCGGTCAGCCCAGCAAATGTGTGACCATCCCACGTTCACTAGACGGAAGGCTGCAGGTTTCCCACCGGAAGGGCCTGCCTCACGTCATCTACTGCCGGGTATGGCGCTGGCCGGACCTGCAATCACACCACGAGCTGAAAGCCCTGGACTGCTGCGAATTCCCATTTGGCTCCAAGCAGAAGGACATCTGTGTGAACCCGTACCATTACCGGCGTGTGGAGACACCAGTTTTACCTCCAGTTCTGGTTCCTCGTCACAGCGAGTTCAACCCTCAGCACAGTTTACTCGCCAAGTTCCGCGACGCATCTCTTCACAACGAGCCGCTGATGCCGCAGAACGCCACTTTTCCTGACTCCTTCCCCCCTCTGCCCTGCACCTCTTTCTCCACCTCTCCGTCCAGCTCTCTGCAGTCCCCCACTGCACACAGCTACCCCAGCTCTCCCAGCAGCACAGGTGATCCCGCAAGCCCCTTTCACGTCACAGCAGAGACCCCACCTCCGCCATACAGCATGATGGAGACCACTCCACCTGAAGACGTAAAGCCTGGAGAACCCTCCAATCCTCTGAAATTAACCCTGTCTACTCCACACAGAGatttgCGGCCAGTTTGTTACGAGGAGCCGCAACACTGGTGCTCTGTGGCTTACTATGAACTCAACAATCGAGTAGGTGAGACTTTCCACGCCTCATCCAGGAGCATCTTGGTGGATGGTTTCACAGACCCCTCCAACAACAAGAACCGCTTCTGTCTGGGACTGCTCTCCAACGTCAACCGCAACTCCACCATCGAGCACACCCGGAGACACATAGGCAAAGGGGTTCACCTGTACTACGTGGGTGGTGAGGTGTATGCCGAGTGCCTGAGCGACAGCAGTATTTTTGTCCAGAGTCGGAACTGCAACTACCAGCACGGCTTCCACGCCACCACAGTCTGCAAAATTCCCAGCGGCTGCAGTCTCAAGATTTTCAACAACCAGCTCTTCGCCCAGCTACTGTCCCAGTCAGTCAACCATGGTTTTGAAGTGGTCTACGAGCTCACCAAGATGTGCACCATCAGAATGAGTTTCGTCAAGGGCTGGGGAGCAGAATATCATCGCCAGGATGTCACCAGCACCCCCTGCTGGATAGAGATCCACCTGCATGGACCCCTTCAGTGGCTGGACAAAGTTCTCACTCAGATGGGTTCTCCACACAACCCCATTTCATCTGTGTCCTAACAGTGTATATTTACTCTGTAACCCACAGCACAGTCAGATAATTAGCACAGGAGGAAGCAGTGTCAAATTCAACCTGACATTTCCAG

Function

GO: NA

KEGG:

id description
K16791 SMAD9, SMAD8; mothers against decapentaplegic homolog 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245711 lncRNA downstream 4790 35232333 ~ 35234658 (-) True G181441
TU245736 lncRNA downstream 12221 35226519 ~ 35227227 (-) True G181460
TU245516 lncRNA downstream 70295 35168172 ~ 35169153 (-) True G181305
TU245526 lncRNA downstream 80622 35156578 ~ 35158826 (-) True G181315
TU245518 lncRNA downstream 169139 35068121 ~ 35070309 (-) True G181307
TU245747 lncRNA upstream 32389 35283414 ~ 35316181 (-) True G181465
TU245748 lncRNA upstream 39569 35290594 ~ 35351206 (-) True G181466
TU245765 lncRNA upstream 148153 35399178 ~ 35402926 (-) True G181479
TU245767 lncRNA upstream 159394 35410419 ~ 35450392 (-) True G181480
TU245776 lncRNA upstream 213239 35464264 ~ 35533212 (-) True G181489
XM_007229755.3 mRNA downstream 28683 35205157 ~ 35210765 (-) True ccna1
XM_022681482.1 mRNA downstream 35338 35181398 ~ 35204110 (-) True spart
XM_022681480.1 mRNA downstream 58707 35169786 ~ 35180741 (-) True LOC111195093
XM_022681481.1 mRNA downstream 58710 35169786 ~ 35180738 (-) False LOC111195093
XM_022681478.1 mRNA downstream 75076 35075014 ~ 35164372 (-) True LOC103021309
XM_022681483.1 mRNA upstream 3749 35254774 ~ 35269308 (-) True alg5
XM_022681487.1 mRNA upstream 25515 35276540 ~ 35303385 (-) False supt20h
XM_022681488.1 mRNA upstream 25515 35276540 ~ 35303385 (-) False supt20h
XM_022681484.1 mRNA upstream 25515 35276540 ~ 35303385 (-) False supt20h
XM_022681485.1 mRNA upstream 25515 35276540 ~ 35303385 (-) False supt20h
XR_002651488.1 other downstream 2061951 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 2976875 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3304654 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4281681 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 6388343 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 182207 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile