RNA id: XM_007231114.3


Basic Information

Item Value
RNA id XM_007231114.3
length 5776
RNA type mRNA
GC content 0.45
exon number 19
gene id robo4
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29108308 ~ 29148810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAAATCTGGATGGCGCTTCGTTTAACATGAGAGGCGTTTGAGCTCCTAAACAAGTGGAGGATTAAAGTTACTATTACGGCATTTTAACGCGTTTATATGCGACAGAATTACTCGGTATGTTTTGCCTGAGTGTTTTATAAGGTTAAATGGTTGTctttaatcaaacattttaatatatcatGAGTTCGGAGCTAGTTTTCAGCATTTTTTGGATTATTGGGATTGTCCGTTGTCAAGGTCCCAGGCTGCGTCCAGATGAAGGAGTCCCGCGAATAGTGCATCACCCCTCTGATGTGGTAGTGCGGGAGGGCAATCCTGCCACGCTGTCCTGCAGGGCTGAGGGCAACCCAGAACCCTCCATCCAGTGGCTGCGCAACGGCATCCCCATGGAGCCTGAGAAGATGGATGGACAGTCTCGGCCCATGGTCCTGCCTGAGGGCAGCCTTTTCTTCCTAAGCGTGGTCCCTGGGAGGAAGAGCCAGTCACATGAAGCAGTGTATGCCTGCATTGCCCGGAACAGTGCTGGCACCGCAACCAGCAGAAATGCCTCTCTACATATAGCAGCGTTACGTGATGAGTTCCGTGTGCAGCCCAGTGATGTGGAAGTCACCATGGGTGAAGTAGCTGTGATGAACTGCAGCCCACCCGTAGGGCATCCAGAACCCAACATCTCCTGGAAAAAAGATGGCGTCCTCATAAACCTTGCAGACGACCACTACACAGAGCTGAATGGGAAACTGATAATTGCTCCAGCTCGGAGACAGGATTCTGGAGTGTATGTCTGTGTGGCCACAAACATCATTGGAGTCAAAGAAAGTAATGCAGCCATTCTCTCTGTTTTGGAGAAGCCAGCATTGCTGCTTGAGCCACAGGACGTCACTGTGGGCCTGGGTGAGTCAGCTCATTTCTTCTGTGAAGCGCAAGGAGACCCTGTGCCTGTGGTGAAGTGGAGCAGGGAGCAGGGAGCGCTACCTAACGGCAGGTATTTGGTTAATCCAGACCAGAGTCTTCAGCTCCACTATGTGACATTGCAGGATGCAGGCAGGTACACCTGTACTGCAACCAGTGATATAGGGGTGGCTACAGCCAGCGCTCAGCTAGTTGTGGAAGATGCAGGCAGCAGCAGTCAAAGGGATCTGCATAAAGAACTCTCAGCCCTACGGGTCAGTTTGGAGAACGTCACTGTCCTAAGAACTGCATCCAATGTCTCACAGGTCATGTGGAAGcTTCAGTCATTACCCTCCCAGCCGCACTACCTGGAAGGCTTTGAGGTGCTGTACCGCTCCCTGCTGCCTGCCAGTTCAGACTGGGCTGCTCAGAGGGTCCCTCAGCCTGCATTACAGACACACGTGGGGCCCCTAAAGAGAGGCTACAAGTACGAGTTTAAAGTTCGGCCATATGGGAGTGATTTATATGGCAGAGAGAGCAACACCAGACACCTCAGAGTACCAGAGACAGTGCCCAGCACTCCTCCTCAGGAAGTGTCCATAATGATGCCCACAGACCGTAACGACACAGCCCATCTGAGCTGGCTGCCCCCACCTCATGACGCTCACAATGGGATCATTCAAGGATACCAGGTGTGGTGTGTCCAACAAGAAGAGCAGCAGTACCTGAACTGGACAGTGGACAGTGGCACACACAATCTGGAGATTAGCCAACTGCAGCCTGGCAAACACTACTGGATCAGAGTGGCGGCGGTCAATGGGGCCGGGATCGGAGTGCAAAGCAATCCATACAAACTGATAATAGAATCTAAGAAGCCATCAACATCCTTTCACAAAAATGCACTGAATCTATCTGATGTTGTGGCAATAATGAAGGAGCCAATATTTATTGGCAGCATTGGCGCCCTCTTGTGGTGCGTGCTGATGGCTACAGCTATTTATCTATACAGAAAACACATCAGACCATCCAATCTGGGAGGAGGACATCACAAGAAGCCTGgattgtaTCGATTGGCTAGTGAGGATTTAATCATCAAGCACAGGATGGCAGCTCCAGATTCTCCATGGATCTCCGGATCTTGGAGGCCAGACTCCAACAGTGAGCAGTACCAGAGTCTGTGGACACAGAACAAACAGGAGAATGCATGCCTGAAGAGAAGCACTCTACCCATAACAGCCAAACCCGACTCCAGCCCTCTGGAGGCAGCTGTCCCCATTGTGCCCGACAACTGCGGAGTCTACGGCACCTTCTACGTGGATCTGACCGGGAACAAGCTGAAAACATTTAACAGCCCGGCCCAACGGCCCAAAATGCCCCACAACAATACCCAGCAGCTTCCCAGCTCAGAGACCATCCGCATCACTCAACCTGTAGCCAAGGCACCGGTAGTCAGGGAGGGGCAAGTGATGCCATGGAAACGGGCTCTGCCATGCCAGCCTAATATGGGCATTCGAAAGGAATCGTGGGAGAAGAACTTTAAACGAGAGCTGCATGCAGTAAACAGTGCTCCATTAGTTCCCCTGCATCAACAGGCCCTGGTGGTGCGCAATGCCCCTATCAATCATAAACACAGGCTCAGCCAGCATCCAGGAGGGGTCTCAGAGGGCGTGAAGCCGTTCGGTTCTCCCAGAATCCTACACTACTCAGCCTCACTGCACTTAGTGGACATGCTGCCCAATCCTCCTCCTCTGCCAATGGAGGACAGCCAGAGTGTCAGCTCTGAGGAAGGGTCCAGCCGGTCCACTAAGCTGACGGTGGATGCTGGTTCCCTGCAGTCTGTGTGTGCTGCCTCCACCCTGCAGGGTCCTGCTACTGTGGCAACAGGCTGCCCCTCCCAACGAAGCCCCTCCTACAGCCACCTCTCTACTGCATCCTTCTGCCTATCCACTGATGATAATCAGGATACCCTCAGTACACAGGCACACGAGTACCTGGAACTGAGCCCTAAACCACTCAGACGCAGTACCCTGTCTGAGAAGCCCCCCTCCTTGCCCCGTCCATTCTCCCCTACACCCACTTTCGGCTACATCTGTGGGCCCTCTGAGCGTGAGGTGGTGGATGTGGACGATGAGTCTCAGTCAGTGGGGTTCAGGAGCACTGCCCTGAGAAGCACGCCCTCCTCCTGCTGCAGCGAATGGGAGGGCTCGCTGTGGAACGGGTGGGGATCCGTCTCCGAGGGGAACATGCCGAGTGCCCGGACCAGCATCATCAGCTCCTCAGACGGCTCCTTCATGAACGACGCAAACTTCGCTCGAGTTCTGGCCATGACTGCAGAGTCTATGAGCGGAACTTTATCAGATTTCTCCCCGCCGGGCTCTCCTCTGAGCATGCTGTTCCCCCCGCGGGACTGTTTCGGGGAGGTGGACCCCCTGCCCGTGTGGGACTGGAATACAGCCTGGGTGGAGGAGATGGAGGCCCAGTTCAGAGCATCCAGAGAAGGCAGAGACGGCAGAGAGGGCATGGGGTTGTCCAGACGGGAGCACTGGGGAGATCTGCCACACAGCAAGCTGGCCCTCCACAAAACTAACTCACAGCGATgatcacactcctcacaccgaGGAGAGTGGCACCGGACTACATTTCTCACCATCTCAACAGCCTCAGAAGATTTTTATGTTGGCACTACATTTCCCATAGTCCTCTGTAGCAGTTGGTCGTTGTGAATTAATGTTGCATTTGGGTGGACCTCAACAAGCTCTGGTAGCTGGTATAATAttcaacacaaacacatacacacacacacatacatacagtatctgTTACAGTATACACACATGCTGGAACACACATGTGTCGGAAGTTGTTTAAAGCTATTTATCTGAACATCAAGTGTGCTTTGCCTTTAAATTCTATGTACAAAAAGTACAGTTCGGACAAAATATAgatattgtgttttaaatattattgataCATTTCATAAAATATCTGTTTTGTAAACCCACAgttagtttgaactcaaattaagttaaattatgtaaaatttgATATTTCCAACCATCACTCAACtgttttaaattaggtaaacatttgtgggcacaaatacattcaaacagagatatttgagttgaatcaacttataataactgagtttagtctggcTTCTGAcccaatctatttgcatactgggagTCCCCCTCATTTTCTgacacttaccatcagtgtgtagtgattccccaagGCTACCTTaagtaaacttgtagatcatatattatgaagAGCTGTTTGGCCtttatgttgtaggctgtaagagcatgcatcattttctgagctactAACTttaactctgtgttggctgtgtgctCTATACTGTTCTCTctataacatttttgttttatcttcATCTAGTTTTCTATACATATTTCAAAtctgtattttacttaaacaaaatcaaagaaaatactATAtacaaatcattttatttcaccTGACCATGGTCATGACCATGAAGTAAAATTATTATGTAAagcatattacatattatattacatattgcatattatgtaaaaaaaaaaaaaaaaacataaaaatctattaaattaacataaaatttCGGCATAAAAGTTTTTATAACCATATTTCATAACCAGTCTccttaaataatttaagtaaattcaacttatccaggctttcAGTGTACATAGATGTTCTAAACTGTGTGATATAGCCACAGTGCAGTTATAAGTTCATCCAAATGAAAATGGAACCAGTAAAGCTTTCCTTTTTAGCATGCTTTACGGGACCTACAAGCTGACACATGGCTACATTCTCAACATTAATAGACTTGAAGTGTTTTTAAcctcttttaccttttttgcCTTATCATAATCATCCTTAAAGAAGAATGATTAACCAAAATGTGTCCACTATAGCTCGCTAGTGTACTGACATCTATCtgcagggttctgaacatatttatttaccacagaatgtcaTAGAAGTGTTTTTTGAAAACCCAATTTAAGACTGAGGTTAGACCCTGAGTCCAagtatgggcataaacaacatagTGCTGTTTGCCTGTTAATAAGCAGACTCAAATCATTTACAACATCCAACATTACAATCACTGATCATTTTACTACATCACAGCTATTCTACTTGTGTTTAAGACTTTTCACTGAATTAAAAGTTTATGAGGCCGACCCAAATGCAAATTGAGCCgtagatgtgatttttttttaggaaagtcaggaaaacaataaaagcaaacatttctttttcttttcttttctttttatttttttgcagtgtgtttcagGTTGCTTGTGGTTGTTTCAGCTTCAGACTGAAATGAAAACTATGACTAAAGGACTGTAactcaaactgttttttttttacgaatcTCATGTAAATAAGTCAcgttttatttaatatgaagTATATTTTGAGCAATTTGAACAACACAGTGAGTTGatttgtttgtcttttgtttatttgtttgtttgtttttcataaaGGTATAAAGGTTCTCTTCAAGTTTTTTTAGGTTCATAGATGCAAATATAGTTGATTCTTATATTTTCTTGttggtatttttgtgttttattatgaatttaaacagaaaaacagtgaCCTCAGCTAAGATTGGAAGCGAAACGGGAGTTAATTGAATTGTTTAAACActtgtagtgttgttatataacttttatattgttttattatattaagattaaGACTTATTTCTCTGTGGATTTATCATGTGTATTTTTGAATAGATTGTTGTACTAAAATgctattttacatgttttatatttactaattTTCCCACATTTTTTCCCTTAAAGcctttttaatacaaataaactgCAGCTTGGTGATAGCAGAGGC

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0035022 positive regulation of Rac protein signal transduction biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0030334 regulation of cell migration biological_process
GO:0001954 positive regulation of cell-matrix adhesion biological_process
GO:0043542 endothelial cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243601 lncRNA upstream 184716 28915333 ~ 28933140 (+) True G179820
TU243600 lncRNA upstream 205403 28912175 ~ 28912453 (+) True G179819
TU243556 lncRNA upstream 313149 28733121 ~ 28804707 (+) True G179776
TU243523 lncRNA upstream 488857 28628764 ~ 28628999 (+) True G179745
TU243513 lncRNA upstream 504383 28613155 ~ 28613473 (+) True G179735
TU243680 lncRNA downstream 151777 29300587 ~ 29301337 (+) True G179872
XR_002651483.1 lncRNA downstream 154229 29303039 ~ 29305397 (+) True LOC111195084
TU243715 lncRNA downstream 356743 29505553 ~ 29505977 (+) True G179901
XR_002651484.1 lncRNA downstream 479681 29628491 ~ 29640752 (+) True LOC111195086
TU243833 lncRNA downstream 605421 29754231 ~ 29754625 (+) True G179985
XM_007231113.3 mRNA upstream 19064 29090621 ~ 29098792 (+) True tmem218
XM_007258111.3 mRNA upstream 732761 28165079 ~ 28385095 (+) True LOC103040165
XM_022681366.1 mRNA downstream 267013 29415823 ~ 29421907 (+) True msantd2
XM_007231119.3 mRNA downstream 280081 29428891 ~ 29503168 (+) True esam
XM_022681367.1 mRNA downstream 361288 29510098 ~ 29516946 (+) False LOC103034698
XM_022681368.1 mRNA downstream 361288 29510098 ~ 29516946 (+) True LOC103034698
XM_007231120.3 mRNA downstream 379504 29528314 ~ 29557162 (+) True fez1
TU243091 other upstream 1592415 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 1592467 27524318 ~ 27525389 (+) False LOC103038954
TU243054 other upstream 2201512 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 4615911 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 4663234 24447880 ~ 24454622 (+) False LOC103032894
TU244158 other downstream 1990534 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 2284388 31433198 ~ 31433909 (+) True G180266
TU244438 other downstream 3123259 32272069 ~ 32273798 (+) False G180460
TU245165 other downstream 5024149 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 6667225 35816035 ~ 35836197 (+) False LOC103024766

Expression Profile