RNA id: XM_007231167.3


Basic Information

Item Value
RNA id XM_007231167.3
length 2109
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103024145
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11250375 ~ 11322335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagttgtggGAGGAGCGTGAAGAAAGGATGTGTTTCTACAGGATCAAATTCACACTGCTTCTCATTCATAACTCAGagcagtgaaagagagacatagaaagatagagagagagaaagagagagagatgcttgtttgagTCAGTAAGTGTGAGAATTACTCAGCGAGGAGagcaacaaagagagagagagaaaaagagagagagagatagagagatagaagtGAAGAGCAGCACAGTGGACAGTTTGTGGACACTGTCAACATGGGCGCAGTTGTGGGCACCCTGACCATGCAGACCAAACAGAGACAGCCATCCAGAGACAAGGTGGACGATGAGTTGGAGATGACCATGGTGTGCCATCGCCCAGAAGGCCTGGAGCAGCTCGAGGCTCAAACCAATTTCTCCAAACAAGAACTTCAAGTCCTTTACCGTGGcttcaaaaatGAGTGTCCCAGTGGAGTGGTGAACGAGGAGACGTTTAAACACATCTACGCTCAGTTTTTTCCTCATGGCGACGCCAGCACATATGCACACTATCTGTTTAGAGCTTTTGACACTACAAATAACGGATCTATAAAGTTTGAGgAGTTTGTGATGGGGCTGTCCACTCTCCTGCGAGGAACAGTCAGAGATAAGCTGGAATGGACATTCCATCTGTACGACATCAACAGAGACGGGTTCATCAGCAAAGAGGAAATGACGGACATTGTGAGGGCCATCTACGATATGATGGGAAAGTACACTTACCCTGCACTGAAAGGAGACGTTCCCAAACAACATGTTGATGCTTTCTTCCAgaaaatggACAAGAACAAAGATGGAGTTGTGACACTGGAGGAGTTTGTCCTGGCATGCCAGGAAgATGAAACCATGATGAGGTCCATGCAGCTGTTTGAAAATGTGATGTAAAGCCgacaagcagagagagtgtgaaagcaAGGGATTAGACTGAGCGGTTTATAGGAGAGcgtgagggagagagtgagagatggcaaaacacaaaactctcactttctctctcctgaAACCTGCACCAGACACTGACTGCATCTAGGGAAGAATCTAGATGAGAACTTTATGAAGCTAAAGAActgtataataaacatattgacTTACCTGAATGGAGAGGTGTGGTCCTTGAATGCTGAGGAAATCTGAGGAAAACTCTCTCTTGCTATGAAGGAAAACAGAACTGATGATTTGGACATTTGTAAGCATCCATGATGAACCCTTGTGTCTGCTACCTTGACCCTCTGCTTTTTGCTAAAGAAAGAGGGCACCAACTGTGAAACTTTGGAATTGGACAAATTGGAAATGTTGGAGATCTTTTGAACTGCAATTTGAGTTTCAGGCCATTATTTTGGAGCTACAAGACAAGGACTCCCTCTACCTGTGATAAAGTTGAACTGCATCTAGGAGGTTTTGACTTCTGCTTTGGGTTATTCTGTAATTGCCAAGAGTTTGCATGTTTTCCCAGGAGATATGCTCCCTTTTATTTACTTGAATGTTGgcctataatataatatagtataatatgaaAGCCTAATTATGTCATTTTAGCATTACATGGTTTAAGGAGTTATTTATTACAGTCATGGTATGCAGGGATGACTTCTTGGATGATTgctgttgtcttgtcttgtgttGTAGGCTGTTTACAATATTGCTTATTATAAATTCTTTCTGTCCTCAATACGTCCCgtttatatgtctgtctgtccctgGACTAGGAAACCATTAAGCATAATTTTGTGTGAGAGAATGAATGCGTGTGTATTCAGCAGAACTCAGAAAGTGGTTGTATATTAATTGCTCTGCTTAATTTCATCAAGTGACAATCCAACCCCCATCTGTCTCAATGTTTCTCGAGAACTTTTATTTCTCTGCGAGGAACATATTTGTCATTATAGGtcatttaagtttaatttattaTCCATTAAACACAGAGGAAAAGAAATTGAGCATAAACGCAATTGAGTGCAGTGGCACATTAGGACCTCTCTACTGAGTCAGATGGGCAAAGACGGGTTTAAAATCCTTTGAATGCTGTAAAATGCTAATCTAAATCAATGGCAATTTAGAATAAAACTTTgtgaagaacttaaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236938 lncRNA upstream 32147 11190481 ~ 11265122 (+) True G174964
TU236916 lncRNA upstream 159312 11137549 ~ 11137957 (+) True G174944
XR_002651422.1 lncRNA upstream 201369 11093717 ~ 11095900 (+) True LOC103022678
TU236899 lncRNA upstream 208430 11087719 ~ 11088839 (+) True G174930
TU236795 lncRNA upstream 277851 10832168 ~ 11019418 (+) True G174874
TU236962 lncRNA downstream 79058 11401393 ~ 11401613 (+) True G174983
TU236965 lncRNA downstream 87762 11410097 ~ 11416593 (+) True G174986
TU236966 lncRNA downstream 87762 11410097 ~ 11416593 (+) False G174986
TU236982 lncRNA downstream 116806 11439141 ~ 11439725 (+) True G174997
TU236986 lncRNA downstream 120017 11442352 ~ 11460006 (+) True G174998
XM_007231185.2 mRNA upstream 139081 11154950 ~ 11158188 (+) True LOC103030157
XM_022681052.1 mRNA upstream 171525 11113815 ~ 11125744 (+) True LOC103029829
XM_015608815.2 mRNA upstream 171525 11113815 ~ 11125744 (+) False LOC103029829
XM_007231161.3 mRNA upstream 212622 11081892 ~ 11084647 (+) True LOC103022370
XM_022681049.1 mRNA upstream 294372 10999496 ~ 11002897 (+) True LOC111195029
XM_022681054.1 mRNA downstream 2553 11324888 ~ 11334033 (+) True LOC103023833
XM_022681055.1 mRNA downstream 2912 11325247 ~ 11334033 (+) False LOC103023833
XM_007231175.3 mRNA downstream 427878 11750213 ~ 11865916 (+) True LOC103027020
XM_022681061.1 mRNA downstream 613325 11935660 ~ 11939097 (+) True LOC111195033
XM_015603867.2 mRNA downstream 665834 11988169 ~ 11993224 (+) True LOC107197312
TU236775 other upstream 277851 10832168 ~ 11019418 (+) False G174874
TU236802 other upstream 277851 10832168 ~ 11019418 (+) False G174874
TU236173 other upstream 2744660 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 3371829 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4756137 6537324 ~ 6541132 (+) False LOC103041160
TU236978 other downstream 107536 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 586537 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 586537 11908872 ~ 11913456 (+) False G175108
TU237153 other downstream 586537 11908872 ~ 11913456 (+) False G175108
TU237301 other downstream 869055 12191390 ~ 12192751 (+) False LOC103027177

Expression Profile