RNA id: XM_015601931.2


Basic Information

Item Value
RNA id XM_015601931.2
length 2568
RNA type mRNA
GC content 0.45
exon number 12
gene id katnal1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12796116 ~ 12809169 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAGCTCCGCCTCTCTATCCGCCTTCCGACGTTTTTCAGTCGGCGTCTCTCCGCGGCCATGGTAACAACAGGGCGCTACGGTCTGCGGGGACTCGCGTCAACAAAAGCACCTTCAACACAAGCAACCCCAAGCCCTCAGATTGGATCCTCACattctttacacatttttacaaaatgaatctgACTGAGATCTGTGACAATGCTAAGAAGGGAAGAGAATATGCATTGCTTGGCAACTATGACTCCTCCATGGTGTACTATCAGGGTGTTCTCCAGCAGATCCACAAGCACTGTCACTCTCTTCGAGATCCTGCACTGAAAGTTAAGTGGCAGCAGGTGCGacaggagctggaggaggaataTGAGCAGGTCAGAAGTATCGTTAACACTCTGGAGAGTTTCAAGGTGGATAAGCCAGTTGACTTTCCCAATCCCCAGCCAGAAGAATGCCCTAGGGACCCTGCTGTATGGCCACCCCCTACACCTGCAGAACACAGGGTACCTGCCCAGGTGAAGAGGCCAAACACTGGAATGAAGCCCCAGAGGAAGGACTCACCTGGAATGCAGCACCGTGGGCCAGCAGGGAAGGGCCAACCCAATGCTAAACAGGACAGACCTGGTGCCCGTGATGCCCGCACTGCAAAAGCTAAAGAAGACAAAGGCAGAAAAGGAGCCCAGGAGGGGGTCGGGGATGGAGAGCAGAAGAAATTTGATGGTACCGGTTACGACAGTGACTTGGTTGATGCACTGGAGAGAGACATTGTGTCAAGAAATCCCAATATCCACTGGGATGATATAGCAGATCTGGAGGATGCCAAGAAGCTGCTGCGAGAGGCTGTGGTCCTGCCAATGTGGATGCCAGATTTCTTCAAGGGCATCCGGCGCCCATGGAAGGGTGTACTGATGGTGGGACCCCCTGGTACAGGCAAGACCATGCTGGCTAAAGCTGTAGCCACTGAGTGTGGCACCACCTTCTTCAATGTATCATCTTCTACACTCACATCCAAGTATCGGGGAGAGTCTGAGAAGCTTGTGCGGCTGCTCTTTGAAATGGCTCGATTTTATGCCCCTACCACTATTTTTATTGATGAGATTGACTCTATTTGTGGAAGACGTGGCACATCAGATGAACATGAAGCAAGTCGCCGAGTGAAATCTGAGCTTCTGGTACAGATGGATGGGGTAGGAGGTGCGTTAGAAAATGACGACCCCTCTAAAATGGTGATGGTTCTGGCTGCAACTAACTTCCCATGGGATATTGATGAAGCACTGAGGAGGAGATTGGAAAAGAGGATCTATATTCCCCTGCCAACAGCTCTAGGGTACCAGATTCAGCTCATCAAGTATTTATCAAACTCTTCATTAAATTACTCAGCAAAAGGCCGAGCGGAGCTGCTGAAGATAAGCCTGAGGGAGGTGGAGGTGGCGTCTGATGTTGACCTGGCCGTCATTGCTGAGCAGATTGAGGGCTATTCTGGGGCTGACATCACAAATGTCTGCAGGGATGCGTCCATGATGGCGATGAGACGGCGGATCCAGGGCCTAAAGCCAGAGGAGATTCGTGCACTTTCCAAAGAAGAGCTGCAGATGCCTGTCACTATGGAGGACTTTGAGCTTGCACTTAAAAAGATCTCTAAGTCAGTCTCAGCTGCTGACCTGGAGAAATATGAGGCCTGGATGAACGAATTCGGctctgtttaataaaaaagtgctGAATAAGGCTGACTGGAAAGCAGAGCGGATTGAGAAGgaaacttgattttttttttttttgtgactgtgAAGATCAATACTTGAAGcttacattttcatttcactcAGACTGTCTCAGACATTCAAAGCTGTACATCTATAAGTGTCTTTGTGCAGCTAGATGTTTTTTGCACTCTAGCAGTACTGCTGTAACACACTAGCTGCTCAGTGTGGTGTGAATTCCTCTGATTTTctgaaaaaagctattttttttttatgttttgtggaTGTCAAAGCCACTTAAATTTAGTTGAGCTGTACCAGCAGGTTGTGATGTAGgtactttattcattttttatgtgtTAGAAAGGAAAGGTATAGAtgcatgtgtgttttgtgttaaacTGAATTTTAATTACTTAACTGTCAGGGTCTTAATAAATAGTTTACTTTTCTCAAATTGTATATTTTGGGGtggaaatatatttaattctcAGCCCATTAGGTACAGATGGTAAATGTAACGTTTTTCCCTTGATGTAAGAACTCAAAGAACCACTGAAACCACTGTAAGCACACAATTCCTCACTTTGATAGATGCATTACTGTCATAATTGCATCAGTTTTATATCCCCTAAACTATGGCCCGGTGAGACTTCACTAGATAATGTAATACTGTACATACCAAACGATCACTACATAATTAACAGTAATTTCTGAATCTGGATTACCTGAATCACTAACGAATTTAAGGGGTTAACACTTTTTTAGCAATGTAGATGACTAATTGGATGTGGCTGGatcaggcctgtcacaataattacattatcgacttattgttcaataaatggacatgacctcaatcattttaataa

Function

GO:

id name namespace
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237518 lncRNA upstream 35887 12758233 ~ 12760229 (+) True G175384
TU237504 lncRNA upstream 57244 12732082 ~ 12738872 (+) True G175378
TU237507 lncRNA upstream 57244 12737996 ~ 12738872 (+) False G175378
TU237495 lncRNA upstream 84732 12710314 ~ 12711384 (+) True G175372
TU237478 lncRNA upstream 87338 12703614 ~ 12708778 (+) True G175356
TU237525 lncRNA downstream 61613 12870782 ~ 12872646 (+) True G175388
TU237837 lncRNA downstream 86953 12896122 ~ 12896464 (+) True G175641
TU237840 lncRNA downstream 89710 12898879 ~ 12899168 (+) True G175644
TU237841 lncRNA downstream 90442 12899611 ~ 12900020 (+) True G175645
TU237899 lncRNA downstream 244530 13053699 ~ 13062086 (+) False G175665
XM_007235407.2 mRNA upstream 1923 12791223 ~ 12794193 (+) True LOC103039534
XM_022681073.1 mRNA upstream 103983 12673878 ~ 12692133 (+) True ptrh2
XM_007238996.3 mRNA upstream 255915 12524141 ~ 12540201 (+) False rnft1
XM_015602943.2 mRNA upstream 255915 12524141 ~ 12540201 (+) False rnft1
XM_007238997.3 mRNA upstream 256542 12524141 ~ 12539574 (+) False rnft1
XM_007235411.3 mRNA downstream 27561 12836730 ~ 12870232 (+) True ubl3
XM_007235430.3 mRNA downstream 218952 13028121 ~ 13029690 (+) True LOC103046100
XM_007235413.2 mRNA downstream 229781 13038950 ~ 13040433 (+) True LOC103041695
XM_007235432.3 mRNA downstream 289457 13098626 ~ 13099926 (+) True LOC103047014
XM_007235414.3 mRNA downstream 315330 13124499 ~ 13126067 (+) True LOC103041997
TU237508 other upstream 51063 12739503 ~ 12745053 (+) True G175379
TU237308 other upstream 586667 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 603365 12191390 ~ 12192751 (+) False LOC103027177
TU237152 other upstream 882660 11908872 ~ 11913456 (+) False G175108
TU238049 other downstream 511615 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 580157 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 601941 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 870190 13679359 ~ 13685563 (+) True G175900
XR_002651440.1 other downstream 1038093 13847262 ~ 13868855 (+) False prdm15

Expression Profile