RNA id: XM_007236209.3


Basic Information

Item Value
RNA id XM_007236209.3
length 3903
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC103026857
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26902839 ~ 26909223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGCGAGGTGCTGTTATTCAGGCAGAAAGACTATCACTATTTGGTTGCgggtaatattttttattttcaaaattaaTGAAAGACTGACAAACTTCTCGACTACCTCGACTCGCACGAATGATCTGAAACGCGAACCTGGTGATGCCCGAGGGAAGAATGCATCCACCCGGACAACTTATTCCCGTGGATTTGCGCCACGGATCGCGTAACGGCGTTATCCGGCTGTTTTACAAAGTAGCAGGTAAACTTGAAAAAtagctagctaggtagctaacTGGCTAACCTCGGCTTTCACCAAACTGTGGCGACTCGTATTTATCAGCTCTTCTCGCTCTAAGTGGACGGTGGGGCTGAAGTGAAGAGTTTAAAGAAAAGTTTGTGTGACTGGGATAACTAGTTGGACccagtctgtgagtgtgtgtgtgctggcggCTGTTCACACTAAACCTGTCGGAGCTGCTCCATAACTTCACTCCAGCGTCCCGCTGTCTGTCTATAGGGAGTTTTACCGAGAGTTAAAACTGATTCTCGCGTTCAGAGCTTTTCAATTAGGACAGAAATATGCGACAGAGTCGAGACCACGGGATATAACGCCGGGGCGTTTTTCTGGGCGGCTTTGCATTGGCTCGAACAGTTTGGCGTGCGGCCTGCTGGTCAGGCTTTCGCCGCGTTCGATTTGGGGCTCAAGCCGCACTAGAGCGCGCTCTGCCCGGCCGCCTCTACCAGCCACACTCGGGTTCGCCGAAGAGCCATGGAGAGGATGGAGGTGGACCAGTGCGCAGGCGCAGCTGGCGGAGGCGGTGCTCTGCGGCGGTCCAACAGCGCCCCCATGATCACTAATGTCAGTGATGGGATGACCGTGTTCAGCTCTAACAGCTCAGCTCGGTATCGGCGGAGCAGTGTGTCAGTAAACCCAAGCTGCCCTTCTAGGACCCTCCCTCTTTCCCCGTTCTCCTTGCCCAACGAGAGGCCAGAGCACAGGCGTCCGATGGAGAATATGGAACTCACTCTCAGAGGGAGTTTGCAGAGATTAAGtgCCTCAGCTGCAGTCCCTTTACCTCCTGCAGGACACTGGCATGAGCATCTGTCACCAGGATTCCATTCCCAGGACTCTGGTGTCACTCCTAATTCTTCACCCAGTCCAACAAGAAGGTTCCGTGGGGGGTCAGTGAGTCCAGCTGTTAGATGGCCGGTGGTTGCACCTTTAAAACGAAAAGGTGGAGTGGAATCTGATGGCCCACCAAAGAAGCTCTTTGTTGCTGGAGTTGCAGATCCTGCCCATATAACTAGCTGCACTGTCAGTGTTTCCCAGTCTGTGGACTCTTCCTCAGGAGCTATGCCCATATGTTCAAGCCCTCAGAGCAGCCCTCTTTCGCTCTCCCCTCCACCACCTTTCACCTCTCACCACCCCAGCATCTAAACCAACGACATTGAGCTTTACGCACTCAGCATCTTTCATTTTAGCGAGACCATCTTAGACCATCCTTAGAGGCCTGGACTGGGAACTGAGGTTGAATGGACtatcagagtaaaaaaaacaatgtctcTGTCTTCACTGCTTCTCATGCTTTCAGCCCTCTTTCAGTAAGTGACCCTGTGCCGAAATCTGTGTCGGTTCTTCATTACTACATGGTGCTTTGGAGGAGTGTGGGTTTTTTCTCTTCTACACAACTTCTGAAGAAACTTATCTGAAAGGACCTTTGAAAATGGAAGAAAGCTGGATATATGTTTGAAGAGGAGAGCTGAAGAGAAAAGGTTTAATTGTGCCAGTGTTGGCACGGTATTGTCCATTATAAAACttgtaatagtataatagttcATTTGCACCAAGGCAAGGATCTGTGGCCCTTACAAAGTATATCTTTTTGTATTTGCCTATTTTAAGCGTGCAAATAGACAAGACTTTGTTTCAGTTATTTgccttttttgctttatttttttaagcagtggcAGAACATCTGTTCTTAATGTCTGCAACAGTTGATGTGATCCAAAGAGGTCTTCCAAAATGTAATTATCCAGATTTGAAATACTCAGTGTTAAGACAGCTAGCTTGAAGGATTCTGAGATCAGTGGGCTTTTTAGGCCACAACGCTGTTTATATGTATGCTCAGTatgtaaaacaacaaaaaggtgtatgttttttcttttgtcttgttttaaatTGTTCTTCTTATGATTTAAGATTTTATGATAATTGTTTtcacaaaaaagacatgaagtGTGAAAAGAACCCTTTTATGGACTGACACTGAGTGGGTTTCACTCTGAAAACCAGAGTCAGCTTGTTCTCTAGATCACAGTATATGGGTACCGTAATTGAGGATGATTTTAGCACTTTGCTTAGATAttccactttaaaaaatgaacatgTGACCAGAGCATTTTCGCACCACATGAAAGCCAAAAGCATTTACCAGCATTTGCCATATGTATTTTAATGCTGCATTTATGTAGCCACACCCTTGTGACCCTTAGCTTGCAAACcatgtgaaaaagaaaaaagacaagctgcatgtgtaaagtataatgtataataataattctccTTTCTATGTAAAATGTCTTATTTCAGACATGGTTTAATTTGATGAatatctttttttgtcttttattttgtttgcacAGTGTTGGACATTATCAGAGTTAATCAGCATTGCTGTTACGTGAATGGGATCATATTtacgtttttgttttgttggtttATTTGAGTGTGAGTAGGGGAGATTGAATGTACAAACTAAcagatgtacagtatttttgaTGGCAGACGTCATTACAGACTTGCGTTATGATGCTTGGAGAAATCATGCAACAGAACTCTATGTATGGCTGTTGTGGAGCTAGATGTGCACAGCAGACGGTGCCCACAGCAGATTCCGATGAGCTCAACGAGCGAAGAAGGAACATTTtcagcagtttttaaaaatgtaattgcctttactttcagtttgtcatgttgtttttctttttttttcttccataaGCTTTATTGCTGGTACAATGAAACGCCTTGTTTGAGTAATTCCAAAGACACTTGCATATGTTGTCACTTCCAGTCTCTAGTATGTTTAGTGCGATTTATCAAAGATTGATATCAATGCTTACCTATGTTGGGTCTTCAAGAGGAATGTGCAATATAGACTGAAATACACCACAGAGTAGGATTGATTATGTTTTGAAGTAATTCCCCATGATctgtatgtttctttttttaatttcaacCAACGCATTGGTCCTGTTAATTCATTATTCAGTTAATTCATctcccatttcctttttttaagaaCGGCAGGTTTACTTTAAGGCCAGAAATAGTCTATTTATTTCTGTGATAGTGTCCTCTAGTAACCTGGACTTACTTGGAATACTTCATTATTTCAGTTgaagaacaaaaataatttgGACAATTTAGTCCAAATATTGTGTTtcatttgatttcttttttgtttctttattttattactcaTTTAAATGGGAGGACAGCCCCATTTAACCATCATAAGtaatctgtaaaaaaagaagaaagaagggaAGAGCTTTAAAGTGATTTTTGATTGTTAGAAATTTGGCTGAGATGTCAGTTGGGAGGCCTTCAATGAAGATAATGTTTTTAAGCACACAGAACATTCTACAATATGGCTGACTGTAGTTCTTGCCACTTGTGTTCAAGATGTAAATATGTTCCAGTTGCCACAAAGAAAAGAagataatgtatttttatgtaagtGTAATATAAAACAGAGGCAACAAAGGCATATTCATTCCCTCTGAATATCACATACAGCACCTGCTAAAGTCTCATTTCTAGTGGATAGGAAGTGCTGTTCACATTTGAATATGTATATTACATTGTATATAAAGATGAACATGACAATAAAagaatactgtatttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243038 lncRNA upstream 13740 26884416 ~ 26889099 (+) False G179345
TU243113 lncRNA downstream 145726 27054949 ~ 27055164 (+) True G179390
TU243126 lncRNA downstream 197080 27106303 ~ 27106693 (+) True G179399
TU243131 lncRNA downstream 241891 27151114 ~ 27240082 (+) True G179404
TU243143 lncRNA downstream 312679 27221902 ~ 27232612 (+) True G179416
TU243094 lncRNA downstream 535554 27444777 ~ 27447272 (+) True G179371
XM_007236207.3 mRNA upstream 510 26897470 ~ 26902329 (+) True LOC103026363
XM_007236208.3 mRNA upstream 510 26897470 ~ 26902329 (+) False LOC103026363
XM_007236206.3 mRNA upstream 6652 26880649 ~ 26896187 (+) True LOC103025645
XM_007236205.3 mRNA upstream 6657 26880655 ~ 26896182 (+) False LOC103025645
XM_007236204.3 mRNA upstream 6657 26880657 ~ 26896182 (+) False LOC103025645
XM_007236211.3 mRNA downstream 4527 26913750 ~ 26916339 (+) True rnasek
XM_007236228.3 mRNA downstream 11861 26921084 ~ 26926573 (+) True LOC103031870
XM_022681332.1 mRNA downstream 32128 26941351 ~ 26972401 (+) False sytl2
XM_007236217.3 mRNA downstream 32129 26941352 ~ 26972401 (+) False sytl2
XM_007236218.3 mRNA downstream 32131 26941354 ~ 26972401 (+) False sytl2
trnam-cau_40 other upstream 2400894 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 2448217 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3194990 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 3937850 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 4193282 22689001 ~ 22709557 (+) True G178388
TU243054 other downstream 4663 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 615095 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 615095 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 4230121 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 4523975 31433198 ~ 31433909 (+) True G180266

Expression Profile