RNA id: XM_007236228.3


Basic Information

Item Value
RNA id XM_007236228.3
length 1223
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103031870
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26921084 ~ 26926573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTTTACGATATAACGGGGAAGCTAGAAAGTGGGCAGGCTTGCTATAAACCAGCTGTGGCAACAACATAGCTGGATACACTGAAGTGGTCAATCTTGCGACGGAGAGCCTAGAGGGACAGTTTGCGCTTCAAAAAAAAGGCGAAAACCGCTGCAGTAGATCGAGGATGGAGAGGGGAGGTGTGCTGTGAGTTAACTACAGTAGTAAAGTCAGTCTGAGGGTTTAAAGAGGCGTTAGGGAGTCAGGTTAGTCCGGAGGTCGCCCTGTTTAGATTTCCTTAGGAATAACGTGAGAGTGGTAAGGGGAATTAAACAGGGAGCTGTGTGAGATTATGATTATGGAGCCGTGGAAAAGTCACGTGCGGGCCAAGCTGTTTCAGAGGGACTGTTTACAGAGAGAGCCCTTCTCTGGACTCTTTAATAAAGTGTCCAGGTTAGAAGACATGCTAAATCTGCACGTGAGTTTATTGGAGGACTTGGAAAGAAAGAGttcaaatcaaaatggaataaaaaagcAGGTTGAAGAAGAAGCCCCTCCAAAACTGTGTCTGGAGTTAAGAGAGGCCCAGCATGACAGAGAAGAGCTGATACAGAAAGTCTCAGACCTCACCAGTGTTCTTTACCTCAAAGAAGCAGAGCTGCAGTACTGTCACTCACAAGTCGCCCGATTCCGCAGCGAAGCCGTTCTGCTGGCTAAAGGAGCGTCCTTACTGAAGGATGATCTGTCGGAGTATCAGTATAAACTGGAGTGTCAGTCTAAGGAGTTGGCAGCATTGAGGCTGGAGCACAAGAATCTGAAGGAGGATCTAGCGGTTACGCGtcaggaaagggaggagctgcTTGAGCGCTGGttagaagagaagaaagaagaggCGGAGCGTCTTAATAAACACAATGCTACTCTAGAGAGATGGAATCGTTTTGCTGGTCGACTGAAAAAACGTCACAGTGGAGGATGTTGTCGACAGAAGTGTGCAGCAGCTACAAATTGCCCAAGAATCACACAGAGACATTCAGCTGATCAGCCTCTGCCAGACATAAGTGAatgagtatttatttaattctattCAGTTTATTAAGAATGTGCATCTCCTGCATTTTGCTATAGTGTCTTGGCTTGTATGGAATTTGTCTTCATAAGCAGGTCTGTACTTTTACTGCAGATGTACTGTGAAAATATAATTCTTGTCAGTTGtattgtacaataaaataaacaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243038 lncRNA upstream 31985 26884416 ~ 26889099 (+) False G179345
TU243113 lncRNA downstream 128376 27054949 ~ 27055164 (+) True G179390
TU243126 lncRNA downstream 179730 27106303 ~ 27106693 (+) True G179399
TU243131 lncRNA downstream 224541 27151114 ~ 27240082 (+) True G179404
TU243143 lncRNA downstream 295329 27221902 ~ 27232612 (+) True G179416
TU243094 lncRNA downstream 518204 27444777 ~ 27447272 (+) True G179371
XM_007236211.3 mRNA upstream 4745 26913750 ~ 26916339 (+) True rnasek
XM_007236209.3 mRNA upstream 11861 26902839 ~ 26909223 (+) True LOC103026857
XM_007236207.3 mRNA upstream 18755 26897470 ~ 26902329 (+) True LOC103026363
XM_007236208.3 mRNA upstream 18755 26897470 ~ 26902329 (+) False LOC103026363
XM_007236205.3 mRNA upstream 24902 26880655 ~ 26896182 (+) False LOC103025645
XM_022681332.1 mRNA downstream 14778 26941351 ~ 26972401 (+) False sytl2
XM_007236217.3 mRNA downstream 14779 26941352 ~ 26972401 (+) False sytl2
XM_007236218.3 mRNA downstream 14781 26941354 ~ 26972401 (+) False sytl2
XM_007236219.3 mRNA downstream 14783 26941356 ~ 26972401 (+) False sytl2
XM_007236220.3 mRNA downstream 14783 26941356 ~ 26972401 (+) False sytl2
TU243054 other upstream 4740 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 2419139 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 2466462 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3213235 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 3956095 22963447 ~ 22964989 (+) True G178485
TU243090 other downstream 597745 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 597745 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 4212771 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 4506625 31433198 ~ 31433909 (+) True G180266
TU244438 other downstream 5345496 32272069 ~ 32273798 (+) False G180460

Expression Profile