RNA id: XR_002651459.1


Basic Information

Item Value
RNA id XR_002651459.1
length 2836
RNA type misc_RNA
GC content 0.39
exon number 8
gene id LOC103022948
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22493440 ~ 22502159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTAACACAATTCGTCAGGACACCGGTGTGTGGCAACGAGGAGTTGACAGCTGGCAAAACCGATCAACTATAGGTTAGCTAGGCTACATTCCTGCCGggatttaaatcagtttttattattttctaagaGAATAGATGCAAATCTGTGTTAGCTGAGTTTGCTGGTGATTAGTATAGAAGCAGGTTAGCAGAAACATTAGTAGTTAGTTGCCAGATTCCCGTAGAAAACGACCAAACATGTCGGAGGAGCTGTTTGGCCTGGAAGACCCGAGTATGAAGATGGAGGAGGACGGGGAGGGGGGTGGAGAAGAACAGATACATGCCGGTGGATCAGGAGACGCTGAAGGATCGAAGATTGATGCCAGTAAAAATGAGGAGGATGAAGGGAAGATGTTTGTTGGAGGGTTGAGCTGGGACACAACAAAGAAGGACCTTAAAGATTACTTCTCCAAGTTTGGGGAGGTTGTAGACTGCACTTTAAAACTAGATCCTATGACTGGACGATCCAGAGGCTTTGGCTTTGTGCTGTTTAAAGAGGCTGAAAGCGTGGAAAAGGTAATTCAGCAGAAAGAACACAAGCTTAATGGTAAAGTCATTGACCCGAAAAAAGCTAAAGCCATGAAGTCCAAAGAGCCTGTGAAGAAGATATTTGTTGGTGGCCTTTCGCCAGATACTCCTGAGGAGAAGATCAGAGAGTATTTTAATGCGTATGGAgagGTAGAGTCAATTGAGTTGCCAATGGAAAACAAGACAAACAAAAGGCGTGGTTTCTGCTTCATCACCTTCAAGGAAGAGGAGCCAGTAAAGAAAATCATGGAAAAGAAGTACCATAACATTGGCCTTAGCAAGTGTGAAATCAAGGTAGCCATGTCAAAGGAGcagtaccagcagcagcagtggggTGGAAGAGGTGGATACCCATCCAGAGGTCGGGGGAGAGGGGGACCTAATCAGAATTGGAACCAGGGTTACGGCAATTACTGGAATCAAGGTTATGGAAATTACGGAAACTACGGCTACAACAATCAAGGCTATGGTGGATACGGGGGCTATGATTACTCGGGTTACAACAACTACTACGGATATGGTGACTACAGCAACCAGCAGAGTGGCTACGGCAAATCTCCAAGGCGAGGTGGCCACCAAAACAGTTACAAGCCGTACTAATACATAAACTCCAAAAAGTAGATacaggtatgttttttttatattgtttatcacaagccatccttAGCAGACAATGTATACTACATTAACCTTTCTATTTAACGTATTttgcttaattttgtttttctttaaagttttttaCAGCACCCTCAAGTGCTTTACTGTAGTGGTAACATAGAGACTTCAGTCTTTTGGCAATAATGTAACAGCTGGTTTTTGGCTGTTtcctgacattttttttgtaacagtaaaaaataacagGTACAGTACTGCTAAATGGGTACCAGAAAATAAGGATTTACAacgaaagagaaaaaaagaagaatgttGTCTCCTAACTCTGACCTTGTTTGTACCTGCCAGCGGGGACTTCCTTGCAGGCCATGAGCTGACCTCCCGATTCTCTCAGGCCCGCTCAATGCGGACAGGGTACGAGAGGCGTACGCTCTCGAATGCTCCCATTTGGTGGGGCAGTGTGGTTCGAGGAGAACGTTGAAGGAGTATATCGTAGTCAAGTCAAGGCTAATATTTATAATGGAGTGTTAATGAAAGGACAAAAACAAAGGTCTTCATTTTAACCGCAGCTACTGGCCACGCCCAGTAGAGCTTGTCTTTGCCAGATGTTTGATAAAGGTGGATATTATTGATGAACAAAACAGTAACACACCCTAAGACAGTGTAACACGCTTTGCTGTAGTCAAAAACCTATTCTTGTTTTGTGTTAAGTTTATATGCTAAGCTCTGTTTATGTTTGTGGATCTAAACTTGTGTAAGTGTTGTGCTACTGCTTCATGAACAGCAAATCATTTGTAATTTTCTAAAGTGagtatttattagaaaaaaatgagtaCAGATGTcgtatagtaataataatattattattattaatttcaaaTAGGCTTACAGAATAGCATAAACTATTGAGAGATGCAATGGacgaaataataaaatgtgtatgtgAAATAAGTTTCTTCCTTGTGAGCATTCCACACTCTCTTTATTGCCAGTGTTATCATCTGTTGTCTTACATGATGAACAGTATTTACAAGCCAGTCAGTATTTCCTGGGGTAAACATCAGTTTAGTTAAAGTCTTGTCCAAATTCAAAGAAAGACAGGAATGCAAgctttaatttcatttcatttggaGTGAGACATTGGAATATACAAGCTaactattacaatatatttacttcataaaataaatggtataAAATGCAAAGtccaaaatgaaataataaaaaaaatacaatcaaaaacttccttctttcattttttttcttaggaAGTGACTTGGAATGAATCACCTACAATAACAAGTTACAGCTATACAGGTTTCAAAGGTCTGGAGGAAGCTATCTATAGGTAACAATTAACTTCAGCAGTGTAATCTCCAATTTTGTAGTGTCTGATGGAACTCAAGAACAGAAAAATTGATTTGTGATTTACTTTATCTGCAAATAAAGGTGATATAAACTCACAGTGCTTAGTCTCAAAGTAAATAAGTCTATAAAAGGGAGTGgaattttgtatatatacaatTGTTTTTACAGAAAGTACGTTTTTATATCAGTTATATTTACATCACGCATTACGTTTCATTTCATGTGAAATTGAAAATGTGGAAACAAAACAATTGAAAAAATTAAGAcctattaacaaaaaaaacaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241571 lncRNA upstream 97243 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 106779 22385170 ~ 22386661 (+) True G178310
TU241549 lncRNA upstream 107887 22348978 ~ 22385553 (+) False G178310
TU241604 lncRNA downstream 14372 22516531 ~ 22524073 (+) True G178344
TU241641 lncRNA downstream 102836 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 127752 22629911 ~ 22671830 (+) True G178381
TU241669 lncRNA downstream 205589 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 211578 22713737 ~ 22720806 (+) True G178394
XM_007241055.3 mRNA upstream 1937 22486823 ~ 22491503 (+) True hnrnpdl
XM_007241057.3 mRNA upstream 1937 22486823 ~ 22491503 (+) False hnrnpdl
XM_007241056.3 mRNA upstream 1937 22486823 ~ 22491503 (+) False hnrnpdl
XM_007241060.3 mRNA upstream 17135 22468437 ~ 22476305 (+) True tmem150c
XM_022680720.1 mRNA upstream 27711 22456319 ~ 22465729 (+) True LOC103025565
XM_022681262.1 mRNA downstream 7729 22509888 ~ 22515585 (+) True LOC103022635
XM_022681261.1 mRNA downstream 17260 22519419 ~ 22528083 (+) True LOC111195066
XM_007255340.3 mRNA downstream 337349 22839508 ~ 22863383 (+) True ankrd55
XM_022681258.1 mRNA downstream 362982 22865141 ~ 22880314 (+) True il6st
XM_007255282.3 mRNA downstream 406634 22908793 ~ 22928244 (+) True slc38a9
XR_002651461.1 other upstream 1937 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other upstream 1937 22486823 ~ 22491503 (+) False hnrnpdl
TU241591 other upstream 27738 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other upstream 27738 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other upstream 27738 22461991 ~ 22465702 (+) False LOC103025565
TU241624 other downstream 42481 22544640 ~ 22546130 (+) True G178352
TU241665 other downstream 186842 22689001 ~ 22709557 (+) True G178388
TU241823 other downstream 461288 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 1201828 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1945721 24447880 ~ 24454622 (+) False LOC103032894

Expression Profile