RNA id: XR_002651461.1


Basic Information

Item Value
RNA id XR_002651461.1
length 1898
RNA type misc_RNA
GC content 0.44
exon number 8
gene id hnrnpdl
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22486823 ~ 22491503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCTGTTTGCGTCACCAGACCCCATCAGCCATTTTATCCGCCGCGTCAGTATTTCAGTGAGTGTTTGCTGTTTGGATCTTTTTTATAGCTATAAAATCGCTTTAGCAGCTCCGCAGAGGGTCACCCCGCACACCTACACACTCTAAAATGCAGACAGAACAGGAAAGTACCGACTTCAGCACCGACGAGTTTCCAGAGGGGTCCAAAATCAACGCGAGCAGGAATCAACAGGATGACGGGAAAATGTTTATTGGAGGCCTGAGTTGGGACACCAGCAAGAAAGACCTAACAGACTACCTGTCCAAGTTTGGAGAAGTGTTGGACTGCACGATCAAAACAGACCCCATGACTGGCCGTTCTCGAGGCTTTGGGTTTGTGCTCTTCCGGGATGCAGAAAGTGTGGACAGGGTTCTGGAACTGAAGGAACACAAACTGGATGGTAAGCTTATTGATCCGAAGCGAGCCAAGGCCATGAAGGGGAAGGAACCTCCCAAAAAGGTGTTTGTTGGTGGTCTCCATCCAGAAACAACAGAGGAACAAGTTCGGGAATACTTTGGAAATTACGGAACTATTGAAAACATTGAACTTCCTGTGGATGGTAAGACAAATGAGAGGCGAGGATTCTGCTTTGTAACGTATGTGGAAGAAGAGCCTGTTCAGAAGCTTTTGGAAAACAGATACCACCAAATTGGAAGTGGAAAGTGTGAAGTTAAAGTTGCCCAGCCTAAAGAAGTCTACAGACAGCAGCAGGGCAGAAGTGACCGGGGCTTTGgagaaggaagaggaggaggattcAGGGGTCGTGGAAGAGGAGGGCAAGGTCAAGGATACAACCAGGGTTACAACAATTATTACGGACAAAACTATGGTAGCTATGGCAATGGATACAACCAGGGATATAATGGCTACTCTGGGTACGACTATTCAGGCTACAACTATCAGAATTACGGATATGGACAAGGGTATGATGACTACAACAgtCAGCCCAGCAGTTACGGCAAGGCCTCCAGGGAGGGTGGAAATCATCAGAACAACTACCAGCCATATTGACGAAATGACATGACCTGCTAAGAGTTATGGTAAGACTGCATCTTTGGCCTTACATCTGTCCTCTTGTATACAATTTAAAGATCAATAGACACAAACTGATTATCCTAAAACAAGTGGTATGCATTATCATGCACCCCATGTTGAGTAATTTGGGGATTTGTCTATAGatctttaattataatttaataatgcttgtgttagtggtgtgccttatttttggttttaaagCTCTCCAGAAAAACATAAGCGTTTTTCTGTAGATTGGTTTCCATTTTCCTCCCTGCTTTTTAACAGGTGATCATAAGGAAATAAGATAGTGTTGATAGCAATGCTAACAGGTAAAGTACTGCTAAAGGGTACAAAGTAAGGGCacctccttatttttttttttttcattctttcccTAATTCTGATATTGTACTTGTTTGTACCTGCCAGCGGGGGACTTCATTGCAGGCCGTGTGTCACCTGACCACGAAATTCTCTGGGCGTCGCACATAGCGGGCAGAGAGCACGGCATGCACAAGAAAACGCTGTCCTGTGGTGAGGAGGCTGACTGAGTTTGTACCCAGGAGGCAGCTTGTGGATACCCTGTCCTTCTTAATCAAAGAGCATCTTGTTTTTAAAGTACCTTTATTTGGTTGTCATCTGTAGATGAAGACATTGAGTGTGTCTGACCTTGTAAATATTGTTTCCAAGTTTCTTATCCAGTGCGTTGATGCGGTAGAACCTGTAGGGTTGTACTGGTGTGTTCTTATATCTTTATTTGGAAATgtcatttgtttttgttgtctttttcCTTCAGTTTTGGATAAAGGGAATATTAAAATTGGGGTATCAAAACAGT

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241571 lncRNA upstream 90626 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 100162 22385170 ~ 22386661 (+) True G178310
TU241549 lncRNA upstream 101270 22348978 ~ 22385553 (+) False G178310
TU241604 lncRNA downstream 25028 22516531 ~ 22524073 (+) True G178344
TU241641 lncRNA downstream 113492 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 138408 22629911 ~ 22671830 (+) True G178381
TU241669 lncRNA downstream 216245 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 222234 22713737 ~ 22720806 (+) True G178394
XM_007241060.3 mRNA upstream 10518 22468437 ~ 22476305 (+) True tmem150c
XM_022680720.1 mRNA upstream 21094 22456319 ~ 22465729 (+) True LOC103025565
XM_007241062.3 mRNA upstream 33212 22421362 ~ 22453611 (+) True sec31a
XM_007254085.3 mRNA upstream 152280 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA upstream 152280 22322841 ~ 22334543 (+) False LOC103047607
XM_022681263.1 mRNA downstream 1937 22493440 ~ 22502159 (+) True LOC103022948
XM_007241052.3 mRNA downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
XM_007241051.3 mRNA downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
XM_015603623.2 mRNA downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
XM_022681264.1 mRNA downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
TU241591 other upstream 21121 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other upstream 21121 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other upstream 21121 22461991 ~ 22465702 (+) False LOC103025565
TU241506 other upstream 185758 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2347259 20138822 ~ 20139564 (+) True G177950
XR_002651459.1 other downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other downstream 1937 22493440 ~ 22502159 (+) False LOC103022948
TU241624 other downstream 53137 22544640 ~ 22546130 (+) True G178352
TU241665 other downstream 197498 22689001 ~ 22709557 (+) True G178388
TU241823 other downstream 471944 22963447 ~ 22964989 (+) True G178485

Expression Profile