RNA id: XM_007241062.3


Basic Information

Item Value
RNA id XM_007241062.3
length 5459
RNA type mRNA
GC content 0.51
exon number 30
gene id sec31a
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22421362 ~ 22453611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCAGTATTGTGCCACGTTGATGGAGGAGGCCAGTGGGGACGTGGAACTGTTCCTATGTGTAACCGGGCTAGCCGCTGACTCTCTGCACACAGTTTACTAACCCGAGAAAAAGGATTTCTGAGCCGCTGATTAAAGTTTTACCCTGTTCAGACCGCGTGGATGAGCTGTGCATGCCTGTGAGCAGCGACCAGAGGGAAGGATGAAGCTGAAAGAGATAAACCGCACTGCCATACAGGCTTGGAGCCCGGCACAGCACCACCCCATTTACTTGGCAGCAGGCACGTCTGCTCAACAGCTCGATGCTACCTTTAGCACCAATGCCTCCCTGGAGATCTTTGAACTGGACCTGGCCGAGCCCAGTTTGGCCATGAAGTCGTGTGGTGCTTTCTCCTCACCTCAAAgATATCACAAACTAGTTTGGGGCCCACATGGGATTGATGAGCACGGGCAGCCCTCTGGAGTTCTGATTGCTGGAGGAGAGACGGGCAACATTATCCTTTATGATCCCTCCAAGATCATCGCGGGAGACAGTGAAGTAGTTATTGCAGAGAGTGATAAACACTCAGGGCCTGTTCGAGCTCTCGACGTCAATCATTTTCAGTCGAACCTGTTCGCCTCTGGAGGAAATGAGTCAGAAATCTACATCTGGGACTTGAACAGTTTTGGCACACCGATGACTCCAGGACCGAAATCACAGCCTCTGGAGGACATTAGCTGCGTGGCCTGGAACTGCCAAGTACAGCACATCCTCGCCTCAGCCAGTCCCGGAGGGAGAGCGTCCATCTGGGACCTAAGAAAGAATGACCTCATCATCAAAGTCAGCGACCACAGTAACAGGATGCATTGCTCTGGCCTGGCCTGGAACCCAGAGGTGGCCACTCAGCTGGTGGTGGCCTCGGAGGACGACCGCATGCCTGTTATTCAAATGTGGGACCTGCGCTTTGCCACTTCCCCACTCAAAGTCCTGGAAAACCACACAAGGGGTGTCCTGGCCATTGCTTGGAGTCTGGCTGACCCTGAGTTGCTGCTGAGCTGTGGGAAAGATAACCGTATTCTGTGCTGGAACCCAAACACTGCTGAGGTTCTTTACGAGCTTCCCACCAGCTCTCAGTGGTGCTTTGACATCCAGTGGTGCCCCAGGAACCCAGCTGTGCTGTCTGCCGCTTCTTTTGATGGACGGATCAGCATCTACTCTATAATGGGAGGCAGTAACGATGCCGTCAACACTGCACAGGCTGATCAGTTAAGTTCCTCGTTTGGCAACATGGACCCCTTCGGCACAGGCCAGACCTTGCCACCGCTGCAGCTGCCTCAAGCCACCCCCACAAACAACACCATCACACCGCTGAAGAAACCACCCAAGTGGCTCCGCAGACCAGTAGGATCTTCGTTTGCTTTCGGTGGTAAACTCGTCTCTTGGGAGAATATTAAACCACCACCGCAGCAACCACAGCAGGCCGTGCCCCATGTTGTGAACATCAGCCAGGTAGTCACTGAAACAGACTTCTTAGACCGCTCCAGCCAGCTTCAGTCCACCCTCACTGCAGGAAGCTTCGTGGAATTCTGCCAGACGAAGATTGAAGCTGCTCAGAATGAGTTTGAGAGGACCGTTTGGGCTTTTCTAAAGgttcagTTTGAAGATGATGCTCGGGGAAAATACTTGGAGCTTCTCGGGTACAAGAAGGAGGAACTAGCACTGAAGATTGCATCAGCATTAGAAGGGAGAGACCACAAGTCAGATGAAGCCAGTGAGGCTCCTCCCACATTCCCACCTTCCACTGTCACTCAGCAAACCACGCCAGAAATGGACTTGATTCCAGTGGCTGAGCCTCACGCTCTTCCCGAGTTGGACCTCATTCCACCTGTTAACGGTGAGCCAGAacctgagctggagctgaacgCTGTTCCTTTGGATGAAGAGGAGTCCGGAAACGTTGACGTAACTGCTGATGCACCAGAGGAGGAGGCAGCACTGGAGGAGGAGGAGAAAAATGGACCCatggaagaagaggaggaggctccagcagctgaagAGAGCCAAACACTGGAGGAGATCCCTGTTGCTGAAGAGGAACCTGTTGCGGATCAGATCCCTGTACTTGAAGAGACCTCGTCTCCATTCCCAGAAACTGTTAGCAGCAAAGCTAGCCAAgATGTAGATAGGCTGATCACCCAAGCGCTGCTTATTGGGGACTTCGAAGCTGCCGTCAACCTCTGCCTTCATGAAAACCGAATGGCAGACAGCATCATCCTGGCCATTGCTGGAGGGCCAGAGCTGCTTGAGAAGACTCAGAAAAAGTACTTGGCCAAGACTCAAAGCAAGATTGGCAAGCTCATCAGCGCAGTGGTGATGAAAGACTGGTTGGATATTCTTGAGACGTGTGATCTCCACAACTGGAAGGAGGCTCTGGCTGCAGTCATGACCTACGCCAAGCCAGAGGAGTTCTCCACCCTCTGTGGGCTGTTGGGCTCCAGGCTGGAGGCTGCTAATGATGCAGAGCTGCAGGCGCAGGCCTGTCTCTGTTACATCTGTGCAGGCAGTATGGAGCAGCTGGTGTCTTGCTGGTCCAAAGGACAGGAATCCTGCAGCCCACTCTCACTGCAGCACCTGGTTGAGAAGGTGGTGGTTCTGAGACAGGCTGTGGAGAAGGCTCAGGGTGGTGTGGCTCCTGCTGTGGGCGCCCTGCTGGCAGAGAAGATGAGTCAGTATGCCGGCCTGCTGGCTTCTCAGGGCAGCCTACAGACTGCCCTCTCCTACCTACCCACCAACACCGAACAGGTTGCAGTGCAGCAGTTGCGTGAACGTCTGAGCAGGGCTCTGGGTCTGCATGCCGCGGTCCAGGCGGCCCCCGCTGCACCAGTGCAGAACAGACAGCCTGTAGCCGTTCCTCAGCAGACCTACCTGCCAGTCCAGCCCCAGCCTCAACAACTGCCGCCTCAGCCCACACCTGCTGCCCCCATACAACAGTATTACCAGCAGGCTAGGGCCGCCTCTACTGTCACTTCCTGGAGTGACCAAACCCCAACAGTTCTGCCCAGTGTCCCTCGTCCGCTAGCCCCAGCAAAAGACCTCCAGGCTGATCCAGCATCATATGGTTTGCAGTCTCCAGTGAGTGCTAGTCCCACTGCAGCCAATCCATTCATGTACTCCCAGCAGTACCAGACCTACCCCCAAGTCCAGCAGTTCACACCTGGTGCTGGGGGACCTTCTCTCTATCAACCACTCCAGTACTCCTCTTCTACAGCCTCTGCTCTTCCTCCTCCACCTTCACCCTCTGCGTCTGCTCCTTTCTACCCTTCCCAGTTCATGCATCCTGCTTCATCTCAGCCTGCGCCTCCGGCCTTCCCCGGGCCTCCTCCACTCATGGCGGGCCAGACGGGCCCTTCtgtgcctcctcctcctctctcctcctcctcctctaccTTCTCTCCTCCTCCCTTCTCTTCCGGAGTCTCCTTCCAGCACGGCGGGCCGGGTTCACCCACCGCCTACCTTCCACCTCCACCCACTGGAGCCTCAGGTACACAGGCTGAGCCCGCCCTCATCCCCGCCTCACAGAGAACAGGGGGAATCATCCAAGATAGCTGGTTCTTGGAAGGGCCCCAGAATGGATGGAACGATCCTCCAGCTCTTAGCAGAGGCCCCAAGAAGAAGAAGGTCCCAGAACACTACACTCCTCCTGCTCCCATCACAGCACCCATCTTGGCTCCGCTGGGAGACCCTCAGCAGGCAGCCCCTGCGCAGCCTcctcagcaacagcagcagccacAGCTCCCAGGACAGCCGGCTGGAGCTCCTCCACCATTCACCCCCATCCAGCAGCAGCCAATGGTTCCAACGGTCAGAAACCCTGCTATGCCCAGCATGACTATAGAAGGGGCACCTGGTGCTCCCACTGGAGGGGTCATACAGCCAATGCAGTCGCTGCCTTCTGAGAAGATCATGAAGAAGCCCATCCCAGATGAGCATCTCATTCTAAAGACGACGTTTGAGGGTCTGATCCAGAAGTGTTTGGCTGCCGCCACAGATCCGCAAaccaagaggaagctggatgatgcTAACAAGAGGCTGGAATCCCTTTATGACAAATTACGAGATCAAACACTTTCTCCAGCCATCGTGGGTGGTCTCCACAACATAGCTCAGAGCATCGAGTCCCGCTCCTACACTGATGGCCTGAACATGCACACGCACATCGTCAGCAACAGCAACTTCAGCGAGACCTCTGCCTTCATGCCAGTCCTGAAGGTGGTGCTAACACAGGCTAATAAGCTGGGAGTCTGATCTCGCGCGCACGCACACTACTTACTACTCAATACCAGTATTCCCGCTCCAACACAAGCCATCCGTCAATAAGGACCAACTGATATTGACATGTACCGCCAGTCTTATCAGAGCTGGAATCGGGCATTCCAGTTTACAGGCTTTTTCTTTAAGATtcaattttatgttttgtttatgtcgccattattttataaatgtgtaatcaTGGCAGAGCAGAGTGCAATGGGGagatttcccttttttcttttttgaaaatTCAAAGGCATGTTATGAGTCAATGCAAGGTTAAGGCATCTGATATGAGATATAAGATGTGTATGGTAAGACAGAATTTACAGGTTTTTCTCATGTAATTGAGCTTTCAAACATTtgcatttttagctttttttttgttcatgtcTTGTCTAAATTAATTTAGCCTATTGATGTGTATGGTTGATTATCCAAAGCTTTGCCATTTCTGTGATGTTTAATGCAATCCCCCACATTATTGCATCTGTTGACCAGGATGGATATAAAATCTCAAACAAGCAGATATTttcaataaatgttatttatttaaagcttttaaattttgatttaatATCAATAGCTAAACAGAGCTAGTAGATCAATGTTTCTCCTTAAGGTTTATGAAGCTgcctagttttttttgttttaaaatcttGAAGAAACCACACAATGCATTAATAGTTCTGATCAATCACTTTAATTCAGTAGGATTTACGAAACATTTCTGAAAACGGAGGAGAAGACGAGCACTGTACATCGTACGGGATGGTTCTCTCTCAGATCAAGCATTGGTGATGTTCACCATAAAAGGGaaagttgctgttgttgttgtcttCAGTCTCCAGGATCACCTGAGTTTTGAGATATTATATGTTGTATATTCTCAACTTGCCTTATGATAGTATGTTAGAGCCACTGGTTTTTCGAACACTAAGTCAGAGTTTGCGGGAATGTCTGAGAGAAGATCTCTTACTGCTGGTCACTGACTGATTCTGTCTACAACTTTTCACGTTTTGTACGTGAAGGCTGCAGCGCTTCATGTGCAACCTTTCACTTGGAGGGTTTTAGTGGACAATGTTTAAAAgaatattgtacatttttgaAGGTGGATGTTTCATTATAAGCCAGTTGTCAAATAAATTGATAAACATTTCTCAGAA

Function

GO: NA

KEGG:

id description
K14005 SEC31; protein transport protein SEC31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241571 lncRNA upstream 25165 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 34701 22385170 ~ 22386661 (+) True G178310
TU241555 lncRNA upstream 35639 22339979 ~ 22385723 (+) False G178310
TU241549 lncRNA upstream 35809 22348978 ~ 22385553 (+) False G178310
XR_002651466.1 lncRNA upstream 39784 22380610 ~ 22381578 (+) True LOC111195069
TU241604 lncRNA downstream 62920 22516531 ~ 22524073 (+) True G178344
TU241641 lncRNA downstream 151384 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 176300 22629911 ~ 22671830 (+) True G178381
TU241669 lncRNA downstream 254137 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 260126 22713737 ~ 22720806 (+) True G178394
XM_007254085.3 mRNA upstream 86819 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA upstream 86819 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA upstream 86819 22322997 ~ 22334543 (+) True LOC103047607
XM_022681248.1 mRNA upstream 106055 22127121 ~ 22315307 (+) True LOC103046694
XM_015607071.2 mRNA upstream 456654 21932331 ~ 21964708 (+) True grin3a
XM_022680720.1 mRNA downstream 2708 22456319 ~ 22465729 (+) True LOC103025565
XM_007241060.3 mRNA downstream 14826 22468437 ~ 22476305 (+) True tmem150c
XM_007241055.3 mRNA downstream 33212 22486823 ~ 22491503 (+) True hnrnpdl
XM_007241057.3 mRNA downstream 33212 22486823 ~ 22491503 (+) False hnrnpdl
XM_007241056.3 mRNA downstream 33212 22486823 ~ 22491503 (+) False hnrnpdl
TU241506 other upstream 120297 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2281798 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2327500 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2645571 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2698973 19720301 ~ 19722389 (+) False LOC111194983
TU241591 other downstream 6781 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 6781 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 8380 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 33212 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other downstream 33212 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile