RNA id: XM_007241259.3


Basic Information

Item Value
RNA id XM_007241259.3
length 2035
RNA type mRNA
GC content 0.45
exon number 7
gene id cnih2
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12144051 ~ 12151050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagagtaagaggggAAGCCAGGGAGCTCCCCCTGCCCCCTCCAAGAAGGGAAGGCGACAGAAAGCAGGACGAAGCGAGAattacagagtgagagagagtcagactGTTGAACAGAACACATCACAGAGTGAGGGAAAAgcgaaacagagaaagaaacaaagagctGGTCCGAtttagagaggaaaagaaaaagcgTGGGGGTTGAGACAGACAgaacgagagagcgagagagagagagagagagagagagcgtgcgaCTGaggggagaaagaaaaacattactCCTGTGCGGGTTCTGAAATTCAGATCTGGATTTTTTGCTGAAAATCACAGAAGAACCAAAGCTGCGCTCTGACAGGCGACCCGCGTTATCTGCCAACATGAGGAGAGAGACGACACCCAGACACCATAGCTTTCAAACAGAAGAGGATCTAATAGCTAAAACCATCAAGTCAGTTTAGAGAGAGTGTCAGATTGTACTGGCTAGAGACTGACTGAAGTTAACGTAGTGAGATAGAAGGAGGCagacagaagaagagagagagaaggagcaagagagagaaaaagtgggGTAGAGTGCAGTTAGTGAGTAAGACAGTtaaagtacagagagagagagagggtgggggtgtttagccctctctctctcgccctgtGTGTACGGCAGGCTGGCTGGAACGGTCATGGCCTTCACCTTTGCGGCCTTCTGCTATATGCTAACGCTAGTGCTGTGTGCCGCACTTATCTTCTTCGTCATCTGGCAGATCATTGCCTTCGACGAGCTTCGTACAGACTTCAAAAACCCCATCGATCAGAGCAACCCCACCAGAGCGAGGGAGAGAATTTTGAACATCGAGAGGATCTGTAACTTGCTGAGAAGGCTGGTGGTTCCAGAATATTCCATACATGGTCTGTTCTGCCTCATGTTCATGTGTGCGGGTGAGTGGGTCACCCTGGGCCTCAACATCCCACTGCTCTTCTATCACCTGTGGAGGTTTTTCCACCGTCCAGCGGACGGATCAGAAGTCATGTATGATCCCGTCAGTGTGATGAATGCAGACATCCTGAATTACTGCCAGAAGGAGTCTTGGTGCAAACTGGGTTTCTACCTGCTCTCCTTCTTTTACTACCTGTACAGtatggTGTATGCGCTGGTCAGTTTCTAATGAGGAATGGACagaagaaatgaagaaagagaagaaatggACCATGCAACAAACCCTGCCTCATCTCCTCCATCCTCCTATTCTCCAGATCAGAGAGTTTCACCATCTTTCAAACAGAAATGGGCACCAGAgaaaccaaaacacacccatcgACACATACGCAGGGAGAAAAAGAggatgaaagagagagggaaatgaAAAACAAGAGGGAGAGCGAGGCAGGCTCAGGAAACGTTGATGTTCTGTAACAGAGATTTTCTTTCTAAAGGGCTGCTGAACATTTCTGCTGCGCAGAGCAACTCGAAGGGTCTTCAACCGCAATGAGATTTAAAACGTAACTTCAGAATTTGATTGtctttgtttctctttattaatctaAACTACAGGTTTTATGTTCTGAAGTCTTTTctgaaaaaaactaattctagAAGACCTTTGTGGATAAAACAAACTTGTCTAGTTACAGTGTTAGAGGAgcatttaagtatttttgtGATAGATTACTTTAAAGCTGCCTGATCTGTAGGAGTTGATTATAAAGCGATTTATTCTCTTTAGCTcagttgtttttaaattttatagaataaactaGTGTCCACCAGATAAACTACTAGTACTGCACAAACTCCTGACTCCTGTAcaccctccaccatgtttacaGTGAAACTCAAAGCAAACGAACCAATGAAATAAGATCATCCAGGCCGGAGAAACTGTTGGAGTGACTTTTCAGAAGAGGGGTAATCAGAAACACTGTGGGAAACTGAAACAGATGGGTAGGCAGTCAGCAGTGGTCAGTTGTTCTGGTTTTGGATGCTCTGCCTTACACTCATTAAATACCATTACACTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237257 lncRNA upstream 74729 12065278 ~ 12069322 (+) True G175201
TU237223 lncRNA upstream 106240 11983263 ~ 12037811 (+) True G175169
TU237213 lncRNA upstream 194282 11948808 ~ 11949769 (+) True G175160
TU237210 lncRNA upstream 198156 11945397 ~ 11945895 (+) True G175157
TU237123 lncRNA upstream 242504 11890741 ~ 11901547 (+) True G175085
XR_002651428.1 lncRNA downstream 36193 12187243 ~ 12189381 (+) True LOC111195036
XR_002651429.1 lncRNA downstream 36193 12187243 ~ 12189381 (+) False LOC111195036
TU237304 lncRNA downstream 41955 12193005 ~ 12204954 (+) False LOC103027177
TU237306 lncRNA downstream 41955 12193005 ~ 12204954 (+) False LOC103027177
TU237307 lncRNA downstream 41955 12193005 ~ 12205043 (+) False LOC103027177
XM_022681537.1 mRNA upstream 48762 12090628 ~ 12095289 (+) True LOC111195107
XM_015603867.2 mRNA upstream 150827 11988169 ~ 11993224 (+) True LOC107197312
XM_022681061.1 mRNA upstream 204954 11935660 ~ 11939097 (+) True LOC111195033
XM_007231175.3 mRNA upstream 278135 11750213 ~ 11865916 (+) True LOC103027020
XM_022681054.1 mRNA upstream 810018 11324888 ~ 11334033 (+) True LOC103023833
XM_007242409.3 mRNA downstream 40306 12191356 ~ 12192787 (+) False LOC103027177
XM_022681538.1 mRNA downstream 163682 12314732 ~ 12316734 (+) True LOC111195108
XM_007238996.3 mRNA downstream 373091 12524141 ~ 12540201 (+) False rnft1
XM_015602943.2 mRNA downstream 373091 12524141 ~ 12540201 (+) False rnft1
XM_007238997.3 mRNA downstream 373091 12524141 ~ 12539574 (+) False rnft1
TU237151 other upstream 230595 11908872 ~ 11913456 (+) True G175108
TU237152 other upstream 230595 11908872 ~ 11913456 (+) False G175108
TU237153 other upstream 230595 11908872 ~ 11913456 (+) False G175108
TU236978 other upstream 707521 11429871 ~ 11436530 (+) True G174994
TU236802 other upstream 1124633 10832168 ~ 11019418 (+) False G174874
TU237301 other downstream 40340 12191390 ~ 12192751 (+) False LOC103027177
TU237308 other downstream 40340 12191390 ~ 12209449 (+) True LOC103027177
TU237508 other downstream 588453 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 1169734 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 1238276 13389326 ~ 13418416 (+) True LOC111195048

Expression Profile