RNA id: XM_007241490.3


Basic Information

Item Value
RNA id XM_007241490.3
length 1956
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC103046333
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26794394 ~ 26799253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCATGAAGGCCACACCCCCACGCCCTAGAGTGGTCGGTCAGTGATTGTGCTGGCTGTGTCTCATTGGGCAGGCGAATATAGGTGAATATAAGCGGTGGTGAATTTTAATCTGTTTGTGTGGCTGCGGGCAGAAATTTCTGGAAAAATGTCGTCGTTGTACAGGCCGTTCTCCGTGTCGGACGGGCCGTGTAAAGATGCGGTTTTGAGGCAGGGATGCAggtctcagcagcagcagcagcatcatccTGCGGCGCTGACCTCGATTCCGCCGTCATGTCGTCTAGCAGGCATCTTTGGTGGAGCTGAGGCGAGCAAGTGTGCGCCAGTTCACCATCTGTGTGCGGGGCAGAGGAGTTTAGCGGCCGCCGCAGTGGGAGGAAGAAAGCTTACCCATCCGGGAAAGGCTATTCTCGCAGGTGGGATTGCAGGAGCCATAGAGATCTGCATCACCTTCCCCACGGAGTATGTGAAGACCCAGCTCCAGCTGGATGAAAGGGCCAATCCTCCTCGATACAGAGGGATAGGTGACTGTGTAAGGCTGACTGTGCAGGACCATGGACTAAGAGGTCTATACAGAGGCCTGAGCTCACTTCTCTATGGCTCCATTCCTAAGTCTGCAGTTCGGTTTGGCACATTTGAGGTCTTGAGCAACCCAATGCGAGATGATAACGGTCGCCTTGATAACACTCGTAGCTTGCTGTGTGGGTTGGGAGCAGGTGTCACTGAAGCGATAGTAATAGTCTGCCCAATGGAGACGCTAAAGgtgAAGTTAATCCATGACCAGTGCTCTCTTCAGCCACGATACCGGGGCTTCTTCCACGGTGTACGTGAAATCATCCGTGATCAAGGGGTTCGGGGGACATACCAAGGACTAACTGCTACAGTGTTGAAACAAGGGACCAATCAAGCTATACGCTTTTACGTTATGAACCTTCTACGCAATTGGTACAAAGGTGATGACCCCAGTCGAGATATGCATCCGCTAGTCACAGCCGTTTTTGGAGCAACTGCAGGAGCTGCAAGTGTTTTTGGGAACACTCCCCTAGATGTGGTGAAGACTAGGATGCAGGGCCTGGAAGCCTATCGCTACAAGAACACTCTAGACTGTGCTTTCCAGATACTGAAGAACGAGGGCCCTCAAGCGTTCTACAAGGGTACGCTCCCACGGCTAGGCCGGGTGTGTCTGGACGTGGCCATCGTCTTTGTCCTTTACGAGGAGGTTGTGAAGCTCCTGAACCAAGTGTGGAGGACTGACTGAAgagggttaacagcaggctctAGTGAAAAAGAGGACTATGCAGACCCAGTTGGCTGTGTCACTCATGTGAAGAGCGCAAGTCTTACCCTGACCCCTGGCTGAGAGCACTGGATTATGCAGCCatctgtgtgtgcatgctttACCCAGCAGAGTGAGAGCATGAGAGGGGAGGCAGCAAGAGAATAAATCCTCTCACGTGTGGTGTTTCGATGCACAGTATATTGCTAACCTTTCTGCCTAGCATACGTACGTATCATACAGCTGCACTTATCACTTAATGTAAAACCATGCAAGTGTCTTCACCACCATGCTCTTACTCCCACTTGTCCACTGCTTATGTGGCGAAACCAAAAGATGAGAACCAAGCGCACACAATTCCCCTCCTCCCAATTTACTTGTACTAACAtggctgttttgtttttttatatatatatttgttgcaCTGAAACATTTTATCAAAGTGTGGAAAACTATTGATAGATGTATATGATGGCTTTTTTTGTACAACTTTAGTGTTTCCCTTCTGTCATTTCCTCCTGAGGCTGGACTTGTGATATGATTCTGCTGTTCAGACTGTCAGTTTTACTAACAGTTTATTCATGGTGAGCTTAACAATGTTTGTCACTTTCCTTCACAAATGCAAGACAgagaaaaccaaacaaaataaaataaaaaataaagcaccaGTGTCAAAATA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242988 lncRNA downstream 97818 26592235 ~ 26696576 (-) True G179306
TU242984 lncRNA downstream 226324 26567644 ~ 26568070 (-) False G179304
TU242985 lncRNA downstream 226324 26567644 ~ 26568070 (-) True G179304
TU242977 lncRNA downstream 436034 26357983 ~ 26358360 (-) True G179297
TU242966 lncRNA downstream 606053 26135533 ~ 26188341 (-) True G179288
TU243217 lncRNA upstream 73325 26872578 ~ 26874563 (-) True G179475
TU243229 lncRNA upstream 78323 26877576 ~ 26879423 (-) True G179487
TU243232 lncRNA upstream 85193 26884446 ~ 26885877 (-) False G179490
TU243233 lncRNA upstream 86234 26885487 ~ 26889085 (-) True G179490
TU243276 lncRNA upstream 211271 27010524 ~ 27010818 (-) True G179524
XM_007241494.3 mRNA downstream 12217 26752892 ~ 26782177 (-) False ltn1
XM_007241493.3 mRNA downstream 12218 26752892 ~ 26782176 (-) True ltn1
XM_022680724.1 mRNA downstream 929920 25656274 ~ 25864474 (-) True LOC103047293
XM_007252466.3 mRNA downstream 1271996 25508722 ~ 25522398 (-) True LOC103044637
XM_007252465.2 mRNA downstream 1287529 25480188 ~ 25506865 (-) False LOC103044157
XM_015602137.2 mRNA upstream 11777 26811030 ~ 26815128 (-) True LOC103031551
XM_022681322.1 mRNA upstream 23486 26822739 ~ 26825856 (-) True LOC103023750
XM_007236212.3 mRNA upstream 109958 26909211 ~ 26912823 (-) True LOC103027750
XM_007236210.2 mRNA upstream 117081 26916334 ~ 26919843 (-) True med11
XM_022681329.1 mRNA upstream 127916 26927169 ~ 26939923 (-) False LOC103028079
TU242660 other downstream 1587041 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 1660238 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 3837168 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 3853883 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 4121711 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 640978 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 664786 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 674102 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 723881 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 725075 27524328 ~ 27525388 (-) True G179583

Expression Profile