RNA id: XM_007241493.3


Basic Information

Item Value
RNA id XM_007241493.3
length 6433
RNA type mRNA
GC content 0.50
exon number 30
gene id ltn1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26752892 ~ 26782177 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttatctggagaaatttaaaaacttttaagttaatctgcagtgctgaaacatTGGATATTGCTCTGTGTTGAGAAAGCAAATtgtaggcccaatcccatttctaacCTCTAGCCCTTGTTTtcgagtaaaagtgtgaaagcTTCCCCTTACGAATGGAGAAAACCCTTTAAGAACCTGTAGGCGACTCTGctgatcatttttaatatgaaaattaatagacatttattaaacTCTAATTTTGCTCAAATGATCCATaggaacccattcattttgcgCTCACTCGGGAGCGCACCCTGCCGGTCTTTTCTCGAGTGGGCGTTCTCTGTATTAGACTGTCTGTGGCCCTTATGTCACTGACGGGCGACGGTGGTAAAGTGTAGGGAAGTGAGTGGCGCTGGGAAAGAGGAGAGAAACCGGGGAGTTTATCAACATGGGAGGCAAAAATAAACAGAGGACGAAGGGGAATGTTCGGCCATCCAGCAGTGGCAGAGCAGCTGAATTACTGGCCCGGGAAAGTGGGGTTGTGCCTGGGTTTGTTGGATTTGGGATTTCTACATCCAATGAGCCAGGTTATGTGCCTGCTATCCATGGAGCTGAAGAAATAGACAACATGGTAGATGCAGACTTTCGCTTGGTTTTGAGGAAGCTGTCTAAGAGGGATGCAGTCACAAAACTGAAGGCGGTACAAGAATTCGGCGCTATGTGTCAAGAGCGGGAATCAGACGTAGTAAAAGGTGTTCTTCCCTACTGGCCACGTATCTACTGCAAAATATCAGTGGATCACGACCGCCGTGTTCGAGAGGCCACACAGCAGGCGTTCGAGCAGCTGATTCTGAAAGTCAAGCGAAACCTCGCCCCCTACCTGAAAGGTATAATGGGCCACTGGCTCATAGCTCAGTGTGACACATATTCCCCTGCTGCCTCTGCTGCGAGCGTCGCCTTCCAGGCTGCATTTCCTCTCAACAAACAGCCAGAGGCtctcagcttctgcagagatgAAGTGTTGACTGTTCTCCAAGACAATCTTCTGAAAGAAACAGCTGATACTCTCAGCGACCCACAGAGTGTTACAGAGGAAGAGCGAGAAGCAAAATATGTGCGTCTGCTCACCAGCTCCCTGCTGGCACTGAAGAGACTGCTGACGGCATTACCTCAGACAGATCGGGAGGCTGTGGGCGAAAGGCTTGCTAATGTTATCTCACAGAAGAAATTCTGGAAGTACAGcaaacataaaactccacagGTCAGAGGGGCATTCTTCGAGGCGGTAGCTGCTCTATGTGAACTTACACCTCATCTTATTCAAGCTGAAGCAGCACAAGCTTGTACTACTGTACTCCTCAGCATTGATGACTCTGACCCTGTGGTCTTGCCACCACTGTGGGAGGCTGTATTGCACATTCTGTCCAGCGTAGAGGACTGTTGGAAGCATGTAAATGCAAAGAAAGGGGTACTCCCCAAGCTGTGGGTGCTGCTGAAGGAGGGGGGGCGTGGCCTGGCTACTTCACTACACCCCAACTTGCTCCCCTTCATCAGCCAACTGCCGGGAGAGGTCACCAATCCTAAACTGGACTTCTGTAGAACATTCTTCTCTTCCACCATACAAGGaTTGTCCAGTGAGCGTGCAGTAGCCAGCCCCTCAGAGTGTGCAGCCATCGTTTTTGCTATCATGGAGTGCCTGCGTTTTCTTCTAATACAAAATGCTGGAGAGGAGCTAGAACATCGCTCCCTACAGACTGCACTTATTACAGAGCATCTCGTGCCTTTGATAGACACAGCTCTAGCAAGCCCTGCTCTGCAGAGTGGCCCTCTGTTCCCACAGATCACAGAGATGCTGGTCTCGTGGGAGAAGCGTACGACTGGAAGTGAGCCCAACACCTTCCAGAGGCTCCTGGTAGATTTCTGGGATGGTCTGGGCAGGCTTTGTGTACGATATGTAGACCATGAGGAGACAGAACAGGTGGGCCTAGAGGGTGTGGCCTCTCTGCTGCAGATCATGCAGAATCCCTCTGTTCAAGGCAAGCGAAAGAAGAAGGCTGTGAAGATCTGCATTGCAGAGCAGGAGTCAAAAGGACAAGGGGAAGATCCTTCGAGCGGAACTCCAGAAACAGAGCCCTCTGAAAGGCAGGGGAAGCAAGACTCTCCCCTGAGGAGTAGCCACCTGCTGGAACTGGTATGCCAGCTGGCGGAATTGAACATGGTGTATGTGTGCGAGCGCGACTCAGAGAGGCACCTGCGCTTTCTGGCTCTACTGCTGCACGCCTTCCCAAAGCCGCAGGTGTTTCAGGTGCTGGTAAAGTCAGAAGATGGGAAGCCTGAGCTGGGACTGGCGGAAGCGGAGCTGGGCACGCTGTCTGAAAACCCGGCTGTATGCTTCCTCTTACAAAGGGTGGTGGTGTGGCTCCGGCAGGATGACAGAAAGGACACAGACTTCCTGGTGAACatggtgttcagtgttctgCAGTGTTGCAGTTCCAAAGCCGAGCAGACTCTCGTTCTCAACCACATCACTAGTGACTTGAAATGGGGAGTTATTCTTCAGATTATACAGAAGGCGGGTGCTGATGCTGGCTGTTTTGAGTTGTGTGAGGGCTGGCTGAGGGGCTCAGTGCTGGGTGAGCGCTTGGTGTGCCTGGCAGGTGAGCTGTGTGCCGTGGGATTGAAAGGATCGTCTTCGCCCTCCTCCTCCCTCATGAGCCAACACAACCACAGCTGGCCACTCATCAGCTTGGCCCTCTCTCAACAGCACAATAACGAGCCTCTGATCGGTAAAGTGTATGTGGAGCAGATAATTGAGCGTCTGCATGCGACACTGTCAGAAGCGAAAGACATATCTGATGCTGGAAATATGGAGCCTCTTGTCTCCTTCATCTCCGATGTGGCCTCCAACTTTTTCTTATCTGTAAGAGGATGTCTACTGCTAGCAGCGACTGAGGATCTGCTGCTGACCATCTTTCAGCTGTGTGCTCAAGACCAGACCCTCACACGCCTCTCAGATGCTCTGCTCCAGAAGTTGAAACTTGCCTACACTGCTGGAGTGCATTCATTAGTCACCCAGTTGGGGGCAGGAGTTACGAAGGGGACCTTCCTCCACAGCGCTGCTATCTGGATTAAAAACCAACTTCTCACCTCTCCTCTTAATTTGAAAAGTCTGCAGGTTCTGGTCCAGGCGGTGACGTCCTTGGCTGAAACTTTGGCCTCCTCCCAGCGAAATGAGTGTCTGCTGTCACAGTTCATCAACTGTCTCACCCCCACACACAAGGAGTGGGATAGCCTCAGAAAAGCTCTGCCTCCTCAGTGGGTAAAGCAGCCCTTGCTCTGTGGGCGTCTCCAAGCAAATGGGGAATACCCCTCCATGGACGTGTGGAAGATGAAGGGCCTGAATCGTCTCCCTGCACATCTGTGTGCCAGTGCTGTGCTGGGGAAAATCATCTTCATCGCAATACCAGCTGAAAACCAGCAGGAGGAGACAGACACCTCAGAACTTCCTGATCTCAGACATACGGTTGCAGAAATTCTGTATGCTCTGCAGTGGTGTGAGGAGATGGAGCATTGCCCTGCCGTGGTGTCTGAATATCGCAAAATGCTCCAAGACTGGAACATAGCTGAGAAAACCCATGGCAACAGTTCAGCCAAAGCTGGCGTTCTGGAAACTCTGTTCACAAGGTCACGAGAAGAGGGTGCCCTCTGGTCACTGACTTTGGCAAGCTTTCTCCAGAATAGCAAACCAGTTGCCAGCGTCGTTAAGAGTCTCTATGGGAACGTAGAGAGTTTCTACCCTCTtacagagcagagtgtgaacACTGTTCAGGTGCTGTGTCCCTCTCTGGCAACTGAAGAGCGAGAGGCACTGATTGCTCTCTCCATTGCTGAACTGCTCAACTGGCAGGAGAAGGAACAAGACGGTGCCCACAGTGTGTGGGCGTGTCTAGCTGTGCTGCACTGCTGTCTGCAGGCTGAGACTCCTGTGGAGGAGGAGATACTGCTGGCAGTAATAGCCACCTTGCTGGAGTGGCGCAACAGCAAAGAAGAGTGGTTCCTTTTTAGcagTGACCTGGGAAAAGCATCCGCTGCCGAGCTGGCCTTGCCTGTGGAGATGATTCGTTTCCTGTGCTGGATGGTAGACCATTCTCCCACAGTTCTTGGCAGCACTAACTGGGACTTCCTCCTCTGCTCCATGCTGGCTTGGCTGGAGACTGCCAGTGAGTGCAGTGGGGCATTCTGGAATCCCTGGGTGCAGCAGTTTGTGTGTGCAAACTGTGAGCTAATTGTGAGACTTACTGAGTTTTTCACAGCACCACCTGCTGGAGTGGCAGAGCAGCTGCCGCCTGAGCTCAGCACAGAGTGGCAGGAGTTTTTCGTGGAGGGAATCCACTCTCTGCTGCTGCCTCTTTTAGTTAAGATTCCTGTGGAGTTCCCTGAGCCAGACGAGCCAGTGTTTCCTCTGGCCGTGGTGGTGGCGGTGGGCGAGGCTCTTGTCTACATCCCTGTCCAGCTGCTCACAAGCAACAAACTCCCGGCCCGGTTTGTGGCAGACCAGAAAAGCAGCCTCCCTGATGCCCTTCAAACTCTACTCAACACTCTCGCCCCACTGCTGCTGTTTAAGGCCCGGCCACTGCAGTTAGCTGTCTATCACTTACTGCACAAGGTCATGCCTCTACTACCAGAAAGCGACCGTGAAAGTGCCACTGCCAAAtctgaagatgaagatgaggaagagcCTTGCCTGTCCCCTCCAGCAGCGATAATGAGTATTCTCACGGCCACAGAGGAGCTGTTAGAGAATATTCTAGGTGGTGTGCAGGTGGGGGAGTTTGCTGTGGTGCAGCCACTCAGCATGGAGCACTGTTGCATCTTGGGATACCTGCTGGCCTGGAAACTCCTCCTGACCTTCTTCAAGGCTGCACCTTCTCAGctgCGTGTCCAGTACTCcctgtatttaaaaaagacCCGTGCTCTGCATAAGCTGCTGCTTCATCTTTTCCGGCTCATGCCAGAGAACCCAATATTGCCTGGACAGTCCACAGACACAGCCAGCAAGGACCACAAAAGCTACTTCACTGAGAGCTTGCCCCTCTCCCTGCACCAAAACAAAGATTTGCAGTGTGAGGTTCCCCACCTGGCCTGCTCTGTGTACTATGGAGCTTTGAAGGACCTGCCTGCCATGGTACGACTCTGGTGGAACAGTCAGGAGAAGCGAGTGTTCAGTGCCGTGGACAAGTTCACCAGCAAGTttgtgagcagtgtgctgtCATTGCAGGAGATCTCCTCAGTGCAGTCCAGCACACAGACCTTCGAGAGTATGACgGTAAAGGCACGCTCTACTACACGAGAGGTGATAGCCACATATTCAGTGGATGATATCTTTATCGAGTTGGTGATTCAGCTGCCTCAAAACTACCCTCTGGGCTCAATCACTGTGGAGAGTGGCCGCAGGGTTGGAGTAGCTGTACAACAGTGGCGCAATTGGATGCTTCAGCTGAGCACATACCTTACGCATCAGAATGGCAGCATTATGGAAGGACTGTCTCTGTGGAAGAATAACGTGGATAAGCGGTTTGAAGGAGTAGAAGACTGCATGATCTGCTTCTCCGTCATCCACGGATCCAACTATTCACTGCCTAAAAAGGCTTGCCGCACTTGCAAGAAGAAGTTCCATTCAGCTTGCCTGTACAAATGGTTTACATCAAGCAACAAGTCCACATGCCCTCTGTGCAGGGAGACCTTTTTCTGAGACCCACAATCATGGACTGATGGACTGATGGACTAATGAAGTTGTGGATGTAGACAATGATGAAaaccaaaatgaatgaaaatatttAGCTTCTAGATTTGTACATATAATTTAGTGTAAATTTCTAAACCTCACTCAAGTGTCTGATTTGGAGGAAACACCTTTACCTCCCTGTTCCCCCAGTAGGAATGAGTTTAATGGCCATTTTTTGGATGGTCAGCCATCCACTAGAACCACAGAGGCCAGAAGTTGTGTAAAAAAGACTtatcttttcttcctttttgtGGCGTGGAAGATGCTGCCTTGATCGTCGTCAACATAAAATATTTGTGGCcgttttcagatttttaatatCCTTACTTATTTCTGTTTATCATGCTGGTAACTGGCCTTTCAGTGGCCTTTAAATGGCTGGTACCTAATTGCCAAGATTAGTAGTTGCATTACTAGATTGGATGAGCGAAATGAGTTATCTATTATAGCATCCCCGCTGTAAAATAACCTGTATTGTCATTCAAAGGGAAGAGTTTTTTAATGGATAAATCCATGTGCTGGTTTTGACTGAATTAGGCCTGCTTATCAAAATGTATGGCTCTGATATACTGTGGACCATTCAGTGACTTGTGAAGAACTGGCAATCCTCATTTTtgttttgaaatgtttaaaattaaaatcgaAATCTGTAGTCAAAAGTAAA

Function

GO: NA

KEGG:

id description
K22377 LTN1; E3 ubiquitin-protein ligase listerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242988 lncRNA downstream 56316 26592235 ~ 26696576 (-) True G179306
TU242984 lncRNA downstream 184822 26567644 ~ 26568070 (-) False G179304
TU242985 lncRNA downstream 184822 26567644 ~ 26568070 (-) True G179304
TU242977 lncRNA downstream 394532 26357983 ~ 26358360 (-) True G179297
TU242966 lncRNA downstream 564551 26135533 ~ 26188341 (-) True G179288
TU243217 lncRNA upstream 90402 26872578 ~ 26874563 (-) True G179475
TU243229 lncRNA upstream 95400 26877576 ~ 26879423 (-) True G179487
TU243232 lncRNA upstream 102270 26884446 ~ 26885877 (-) False G179490
TU243233 lncRNA upstream 103311 26885487 ~ 26889085 (-) True G179490
TU243276 lncRNA upstream 228348 27010524 ~ 27010818 (-) True G179524
XM_022680724.1 mRNA downstream 888418 25656274 ~ 25864474 (-) True LOC103047293
XM_007252466.3 mRNA downstream 1230494 25508722 ~ 25522398 (-) True LOC103044637
XM_007252465.2 mRNA downstream 1246027 25480188 ~ 25506865 (-) False LOC103044157
XM_007241490.3 mRNA upstream 12218 26794394 ~ 26799253 (-) True LOC103046333
XM_015602137.2 mRNA upstream 28854 26811030 ~ 26815128 (-) True LOC103031551
XM_022681322.1 mRNA upstream 40563 26822739 ~ 26825856 (-) True LOC103023750
XM_007236212.3 mRNA upstream 127035 26909211 ~ 26912823 (-) True LOC103027750
XM_007236210.2 mRNA upstream 134158 26916334 ~ 26919843 (-) True med11
TU242660 other downstream 1545539 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 1618736 25130982 ~ 25134156 (-) True G178982
TU241888 other downstream 3795666 22952686 ~ 22957226 (-) False sh2d4a
XR_002651463.1 other downstream 3812381 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 4080209 22672132 ~ 22672683 (-) True G178450
TU243326 other upstream 658055 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 681863 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 691179 27473355 ~ 27477978 (-) False ift46
TU243318 other upstream 740958 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 742152 27524328 ~ 27525388 (-) True G179583

Expression Profile