RNA id: XM_007244708.3


Basic Information

Item Value
RNA id XM_007244708.3
length 1814
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC103032234
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 9645110 ~ 9646923 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCATCACTGGACAACAAGCGTATCGGCATCAACCAAGAGACTGAGGTCTATTTCAGATGGATAACGCAGACTACAGGCAAAACATCACGGTTCAGTACTGCTTCCCTGGACACAATGCATCTTGCAAAAAGGACGTCCGGACAGGCCCTGGATACAtcgttttgttcatttttctctcatgtatatctgtgtgtactgtgtttttgaacCTGGTGGTGAttatctccatctctcacttcaAGCAGCTCCACTCTCCAACCAACCTGCTCATTGTTTCTCTGGCTTCAGCAGATCTTCTCGTGGGAATGTTCGTTATGCCTGTGAAAATAATGCAACTGACAAACTCCTGTTGGTACCTTGGAAATATGGCCTGTATTGTCTTTCCAATAATCAACGGCCTCTCTGTGTTAGGATCTCTCTGCAGCCTGGATTTCATCGCCATTGATCGATATTTGGCCATCAGTGATCCTCTGCATTATTCTAGAAGAATCACTATGTTCAGAACATCTGTGTGCATATTTCTAGGCTGGTCCTTTTGTTTCTTGTATGTTGTTGTTTATATGTACTTTAATGACCATTTCCTGCCATCTCAGCTAACCACCAGATGTTACGGAGAGTGTTTCGTCTTCATAAAACCACCATGGGTGATGAGCAGCacctacatctttttttttttaccttgtacCCTTATTTTCGTCTTATACGCAGCCATTTTTCATGTTGCCAGACGTCAGGCTAAGGCTGTCAGAGCTGTGGTCAATGGAGCAGGCAAAGTTTCAGGCAAAGCTTCAGGCTCATCTGAAACCAAAGCAGCCAAAACACTGGGAATTGTCATTTGTGTTTACTTTGCATTCTGGATACCTTTTTACATCAGTTCCCTAACTGTTCAACGTTTGACCACTGTGTCAATGGTGTGGACTGTGTTCGGCTGGCTATCGTACATCAACTCCTGTATGAATCCACTCATTTATGCCATATTCTATCCATGGTTCCGAATATGTGTTAAGCATATTgtcacttttaaaatatttgaaacaTCATCTTCCAACTTTAATTTGTATAAGGAACATTAATAACCAGTGCTGGAAAGTTGAGCATCACAgagccttttttttctttctttccttttgtcACATTCTCATGTTTGTCGTTTCTCATGTTAAATATTCTGTATGTCTATCGTTTTCATCATATTTTAATCCAGCATTTATTGTTGTGTTGCAATGCAGGTTCAAAATTTCTGTTAAAATGACCTGGTATCTGCAATGGTCCTTTATTTTGAGATTGCTGGAGGGTAGCATGTGTAAATAATCTGTCCATAACAACAGCAGTGGTGTTCAGATATCTGCtgtatgaacacacacacacacacacacagaatgatgAAACCCACACCAACATGCATTTtctaaaatatgattttaatatgaaatgagtgcaacatttataacatttagcACAGTACTTATTTTCctgtataaattataatttgataaaattaaaaaataaataaaaaatattcctgTGGCCATATAGTGGTGCTGTAGAATGTAAACTGAACATTTGTAGATTAACAAATATGTAGTCACTGCAATAACTGCGTAGTATATCTTATCATGACAATAATAGTTAAACTTTTTCAGTTTTCTAAAGAGGCTTAACCGCGTAGTCAAATTGCGCAATTCTATTATGGAGCTTAAAagcccttatttttaaattgctactaaaacaaattattataaaaattaaaactaatttatttaaagttttttttttgtctgtgtaaGCATATGTTTTCTATCATCTATGTTG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236442 lncRNA upstream 271162 9371441 ~ 9373948 (+) True G174609
TU236403 lncRNA upstream 323767 9319390 ~ 9321343 (+) True G174582
TU236404 lncRNA upstream 330972 9313904 ~ 9314138 (+) True G174583
TU236399 lncRNA upstream 503812 9140149 ~ 9141298 (+) True LOC111195017
TU236563 lncRNA downstream 113629 9760552 ~ 9762446 (+) True LOC111195021
XR_002651416.1 lncRNA downstream 113633 9760556 ~ 9762344 (+) False LOC111195021
TU236583 lncRNA downstream 173188 9820111 ~ 9820433 (+) True G174719
TU236603 lncRNA downstream 575787 10222710 ~ 10223083 (+) True G174738
TU236653 lncRNA downstream 664270 10311193 ~ 10311590 (+) True G174783
XM_022681035.1 mRNA upstream 2619 9641027 ~ 9642491 (+) True LOC111195020
XM_022680690.1 mRNA upstream 17325 9626444 ~ 9627785 (+) True LOC111194972
XM_022681028.1 mRNA upstream 146918 9394653 ~ 9498192 (+) False LOC103036148
XM_022680691.1 mRNA downstream 14001 9660924 ~ 9662061 (+) True LOC111194974
XM_022680692.1 mRNA downstream 19118 9666041 ~ 9667743 (+) True LOC111194975
XM_022680693.1 mRNA downstream 27360 9674283 ~ 9675427 (+) True LOC111194976
XM_022681526.1 mRNA downstream 33462 9680385 ~ 9681455 (+) True LOC107197516
XM_022681527.1 mRNA downstream 36981 9683904 ~ 9685135 (+) True LOC111195100
TU236173 other upstream 1092501 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 1719670 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 3103978 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 4461333 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 4741465 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 1185245 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 1185245 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 1782948 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 2261949 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 2261949 11908872 ~ 11913456 (+) False G175108

Expression Profile